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Report for CCDS28573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28573.1 Public Mus musculus 17 Zfp523 23 108 98 CCDS HistoryNCBI Gene:224656Re-query CCDS DB by CCDS ID:28573.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002318.7 ENSMUSP00000002318.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002318.7Link to Ensembl Protein Viewer:ENSMUSP00000002318.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000002318Re-query CCDS DB by Protein ID:ENSMUSP00000002318
Original member Current member EBI ENSMUST00000073534.9 ENSMUSP00000073226.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073534.9Link to Ensembl Protein Viewer:ENSMUSP00000073226.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073534Re-query CCDS DB by Protein ID:ENSMUSP00000073226
Original member Current member EBI ENSMUST00000233613.1 ENSMUSP00000156638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233613.1Link to Ensembl Protein Viewer:ENSMUSP00000156638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233613Re-query CCDS DB by Protein ID:ENSMUSP00000156638
Original member NCBI NM_001357995.1 NP_001344924.1 Updated not alive Link to Nucleotide Sequence:NM_001357995.1Link to Protein Sequence:NP_001344924.1Re-query CCDS DB by Nucleotide ID:NM_001357995Re-query CCDS DB by Protein ID:NP_001344924
Current member NCBI NM_001357995.2 NP_001344924.1 Accepted alive Link to Nucleotide Sequence:NM_001357995.2Link to Protein Sequence:NP_001344924.1Re-query CCDS DB by Nucleotide ID:NM_001357995Re-query CCDS DB by Protein ID:NP_001344924Link to BLAST:NP_001344924.1
Original member NCBI NM_172617.3 NP_766205.1 Updated not alive Link to Nucleotide Sequence:NM_172617.3Link to Protein Sequence:NP_766205.1Re-query CCDS DB by Nucleotide ID:NM_172617Re-query CCDS DB by Protein ID:NP_766205
Current member NCBI NM_172617.4 NP_766205.1 Accepted alive Link to Nucleotide Sequence:NM_172617.4Link to Protein Sequence:NP_766205.1Re-query CCDS DB by Nucleotide ID:NM_172617Re-query CCDS DB by Protein ID:NP_766205Link to BLAST:NP_766205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344924.1 568 Q8BMU0-1 568 100% 0 0
NP_766205.1 568 Q8BMU0-1 568 100% 0 0

Chromosomal Locations for CCDS 28573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28189880 28189952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28194966 28195046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28195148 28195225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28197774 28197973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28200111 28200227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28200439 28200514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28201008 28201133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28201261 28201440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28202115 28202348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28202435 28202598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28203086 28203250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28204455 28204568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28205111 28205209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGAAAGCCTGGGGCTGCAAACGGTGAGGCTCAGTGATGGGACAACAGCCTACGTCCAGCAGGCTGTCA
AAGGGGAGAAGCTGCTTGAAGGGCAAGTGATCCAGCTGGAGGACGGGACCACTGCGTACATTCACCAGGT
GACGATACAGAAAGAGTCTTTCTCCTTTGAAGATGGTCAGCCCGTGCAGCTGGAAGACGGCAGCATGGCC
TACATACACCACACACCCAAAGAGGGCTGTGACCCCAGCGCCCTGGAAGCTGTCCAGCTGGAAGACGGTT
CCACTGCCTACATCCATCACCCTGTGCCTGTGCCGTCGGACAGCGCCATCCTGGCTGTGCAGACGGAGGC
GGGCTTGGAGGACCTGGCAGCGGAAGACGAGGAAGGCTTCGGCACGGACACAGTGGTGGCCCTGGAGCAG
TATGCCAGCAAGGTTCTGCACGATAGCCCTGCTTCCCACAATGGCAAAGGGCAGCAGGTTGGAGACCGAG
CTTTCCGCTGTGGCTACAAGGGCTGTGGTCGTCTCTACACCACTGCCCATCACTTAAAGGTCCACGAACG
AGCTCACACAGGGGACCGCCCATACAGGTGTGACTTTCCCAGCTGTGGAAAGGCCTTTGCAACAGGCTAT
GGGCTAAAAAGTCATGTTCGTACTCACACGGGTGAGAAACCATACAAGTGCCCAGAGGAGCTGTGCAGCA
AAGCCTTCAAGACCTCAGGGGACCTGCAGAAACACGTGCGGACCCACACAGGTGAGCGCCCATTCCGGTG
CCCTTTTGAGGGCTGTGGCCGCTCCTTCACCACATCAAATATCCGCAAGGTACATGTGCGCACCCACACA
GGCGAGCGGCCCTACACCTGCCCCGAGCCCCACTGTGGTCGTGGCTTCACCAGCGCCACCAACTACAAGA
ATCATGTGCGCATCCATACAGGGGAGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGAAAGCGCTTTAC
GGAGTACTCGAGCCTGTACAAACACCACGTGGTGCACACACATTGCAAGCCCTACACGTGCAGTAGCTGT
GGCAAGACCTACCGGCAAACCTCCACCCTGGCCATGCACAAGCGCAGCGCACACGGGGAGCTGGAGGCCA
CGGAGGAGAGCGAGCAGGCCCTGTATGAGCAGCAGCAGCTGGAGGCCGCCTCTGCTGCTGAGGAAAGCCC
CCCACCCAAACCAACCCACATTGCTTACCTTTCGGAAGTGAAGGAAGAGAGCAGTGCCATCCCAACCCAA
GTAGCCATGGTGACGGAGGAGGATGGGCCCCCTCAGGTGGCTCTGATCACTCAGGACGGTACCCAGCAGG
TCAGCCTGTCCCCAGAAGACCTGCAGGCCCTGGGGAGTGCCATCAGTGTGGTGACACAGCACGGCAGCAC
CACCCTCACCATCCCCGGTCATCATGAAGAACTAGCCACATCTGGCACACACACGGTCACCATGGTCAGC
GCTGATGGCACGCAGACTCAGCCCGTCACAATCATTACCTCTGGGGCCTTGGTGACTGAGGACTCAAGCG
TGGCGTCTCTTCATCACCAACAGGTGGCGCTGTTGGCCACAGCCAACGGAACACACATCGCAGTGCAGCT
GGAGGACCAGCAGACCCTGGAGGAGGCCATAAGCGTAGCCACTGCTGCTATGCAGCAAGGGGCTGTGACC
CTGGAAACCACAGAGAGCGGCTGCTGA

Translation (568 aa):
MESLGLQTVRLSDGTTAYVQQAVKGEKLLEGQVIQLEDGTTAYIHQVTIQKESFSFEDGQPVQLEDGSMA
YIHHTPKEGCDPSALEAVQLEDGSTAYIHHPVPVPSDSAILAVQTEAGLEDLAAEDEEGFGTDTVVALEQ
YASKVLHDSPASHNGKGQQVGDRAFRCGYKGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGY
GLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHT
GERPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKHHVVHTHCKPYTCSSC
GKTYRQTSTLAMHKRSAHGELEATEESEQALYEQQQLEAASAAEESPPPKPTHIAYLSEVKEESSAIPTQ
VAMVTEEDGPPQVALITQDGTQQVSLSPEDLQALGSAISVVTQHGSTTLTIPGHHEELATSGTHTVTMVS
ADGTQTQPVTIITSGALVTEDSSVASLHHQQVALLATANGTHIAVQLEDQQTLEEAISVATAAMQQGAVT
LETTESGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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