NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28292.1 Public Mus musculus 16 Map3k7cl 23 108 98 CCDS HistoryNCBI Gene:224419Re-query CCDS DB by CCDS ID:28292.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026700.7 ENSMUSP00000026700.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026700.7Link to Ensembl Protein Viewer:ENSMUSP00000026700.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026700Re-query CCDS DB by Protein ID:ENSMUSP00000026700
Original member NCBI NM_144854.2 NP_659103.1 Updated not alive Link to Nucleotide Sequence:NM_144854.2Link to Protein Sequence:NP_659103.1Re-query CCDS DB by Nucleotide ID:NM_144854Re-query CCDS DB by Protein ID:NP_659103
Current member NCBI NM_144854.3 NP_659103.1 Accepted alive Link to Nucleotide Sequence:NM_144854.3Link to Protein Sequence:NP_659103.1Re-query CCDS DB by Nucleotide ID:NM_144854Re-query CCDS DB by Protein ID:NP_659103Link to BLAST:NP_659103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659103.1 142 P58500 142 100% 0 0

Chromosomal Locations for CCDS 28292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87555941 87556010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87570298 87570359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87581130 87581245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87594238 87594418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGATCAGCACAGCCCGGGTACCTGCAGATAAGCCAGTTCGCATCGCGTTTAGCCTCAATGATGCCCCAG
ATGATACACCATCTGAAGATGCCATTCCTTTGGTCTTCCCAGAGTTAGAGCAGCAGCTCCAGCCTCTGCC
GCCGTGTCACGACTCCGTAGAGTCCATGCAGGTGTTTAAACAGCACTGCCAAATAGCAGAAGAGTACCAT
GAAGTCAAAAAAGAGATCGCCTTGCTTGAGGAAAGGAAGAAGGAGCTCATTGCCAAGCTGGACCAGGCAG
AAAAGGAGAAGCTGGACGCTGCTCAGCTGGTTCAGGAATTTGAGGCTCTGACGGAGGAGAACCGGACGCT
GAAGATGGCCCAGTCTCAGTGTGTAGAGCAACTGGAAAACCTCAGAATCCAGTATCAGAAGAGGCAGGGC
TCCTCCTAA

Translation (142 aa):
MISTARVPADKPVRIAFSLNDAPDDTPSEDAIPLVFPELEQQLQPLPPCHDSVESMQVFKQHCQIAEEYH
EVKKEIALLEERKKELIAKLDQAEKEKLDAAQLVQEFEALTEENRTLKMAQSQCVEQLENLRIQYQKRQG
SS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH