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Report for CCDS27801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27801.1 Public Mus musculus 15 Rnd1 23 108 98 CCDS HistoryNCBI Gene:223881Re-query CCDS DB by CCDS ID:27801.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003451.10 ENSMUSP00000003451.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003451.10Link to Ensembl Protein Viewer:ENSMUSP00000003451.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000003451Re-query CCDS DB by Protein ID:ENSMUSP00000003451
Original member Current member NCBI NM_172612.3 NP_766200.1 Accepted alive Link to Nucleotide Sequence:NM_172612.3Link to Protein Sequence:NP_766200.1Re-query CCDS DB by Nucleotide ID:NM_172612Re-query CCDS DB by Protein ID:NP_766200Link to BLAST:NP_766200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766200.1 232 Q8BLR7-1 232 100% 0 0

Chromosomal Locations for CCDS 27801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98670597 98670842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98672511 98672645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98673846 98673955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98676487 98676574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98677230 98677349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGAAGGAGAGACGGGCACCGCAGCCAGTGGTGGTCAGGTGTAAGCTCGTCCTGGTGGGAGACGTGCAGT
GTGGGAAGACGGCGATGTTACAGGTGCTAGCGAAAGACTGCTATCCCGAGACCTATGTGCCTACCGTGTT
TGAGAATTACACAGCCTGTTTGGAGACAGAGGAACAGAGAGTGGAGCTTAGTCTCTGGGACACCTCAGGT
TCTCCTTACTATGACAATGTTCGTCCACTCTGCTACAGCGACTCAGATGCGGTATTGCTGTGCTTTGACA
TCAGCCGTCCAGAGACCATGGACAGTGCACTCAAGAAGTGGAGAACAGAAATCCTAGACTACTGTCCCAG
CACACGTGTTTTGCTTATTGGCTGCAAGACAGATCTTCGAACAGACCTGAGCACTCTAATGGAACTGTCC
CACCAGAAGCAGGCACCCATCTCCTACGAGCAGGGCTGTGCGATAGCCAAGCAGTTGGGCGCAGAAATCT
ACCTGGAGGGCTCGGCTTTCACTTCCGAGACAAGCATCCACAGCATTTTCCGGACAGCATCCATGGTGTG
TCTGAACAAGTCTAGCCCAGTGCCCCCGAAGAGCCCCGTCCGAAGCCTTTCCAAGCGACTCCTCCACCTC
CCCAGTCGCTCTGAACTCATCTCAACTACATTCAAGAAGGAAAAGGCCAAAAGCTGTTCCATCATGTGA

Translation (232 aa):
MKERRAPQPVVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG
SPYYDNVRPLCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELS
HQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSETSIHSIFRTASMVCLNKSSPVPPKSPVRSLSKRLLHL
PSRSELISTTFKKEKAKSCSIM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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