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Report for CCDS17905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17905.1 Public Mus musculus 3 Uox 23 108 98 CCDS HistoryNCBI Gene:22262Re-query CCDS DB by CCDS ID:17905.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029837.13 ENSMUSP00000029837.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029837.13Link to Ensembl Protein Viewer:ENSMUSP00000029837.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029837Re-query CCDS DB by Protein ID:ENSMUSP00000029837
Original member Current member NCBI NM_009474.5 NP_033500.1 Accepted alive Link to Nucleotide Sequence:NM_009474.5Link to Protein Sequence:NP_033500.1Re-query CCDS DB by Nucleotide ID:NM_009474Re-query CCDS DB by Protein ID:NP_033500Link to BLAST:NP_033500.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033500.1 303 P25688 303 100% 0 0

Chromosomal Locations for CCDS 17905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146597204 146597233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146610270 146610488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146612283 146612399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146612493 146612571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146624464 146624647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146625755 146625878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146627801 146627884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146630533 146630607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCCCATTACCATGACAACTACGGAAAGAATGATGAAGTGGAATTTGTCCGAACTGGCTATGGGAAAG
ACATGGTCAAAGTTCTCCATATTCAGAGAGATGGAAAATACCACAGCATCAAAGAGGTGGCAACTTCGGT
CCAGTTGACTCTGAGGTCCAAGAAGGATTACCTACACGGTGATAATTCCGACATCATCCCTACAGACACC
ATCAAGAACACTGTGCACGTCCTGGCGAAGCTCAGAGGGATCAGAAACATCGAGACCTTTGCAATGAACA
TCTGTGAGCACTTCCTCTCTTCTTTTAACCATGTCACTCGAGCCCACGTCTACGTGGAAGAGGTCCCCTG
GAAACGATTTGAAAAGAATGGGATCAAACACGTCCATGCATTCATCCACACCCCGACGGGAACGCACTTC
TGTGAGGTGGAGCAGATGAGAAACGGACCTCCCGTCATTCACTCTGGAATCAAAGACCTCAAGGTCTTGA
AAACAACCCAGTCTGGGTTTGAAGGGTTCCTCAAGGACCAGTTCACTACCCTCCCTGAGGTGAAGGACCG
ATGCTTTGCCACTCAAGTGTACTGCAAGTGGCGCTACCAGAGACGGGACGTGGACTTCGAGGCTATCTGG
GGCGCTGTCCGGGACATTGTCCTGCAGAAATTTGCTGGGCCCTATGACAAAGGTGAATACTCACCTTCCG
TGCAGAAGACCCTCTATGATATACAAGTGCTGTCCCTGAGCCAGCTTCCTGAGATAGAAGACATGGAAAT
CAGCCTTCCGAACATTCACTACTTTAACATCGACATGTCCAAAATGGGACTGATCAACAAGGAAGAGGTT
TTGCTGCCTCTCGACAATCCCTACGGCAAAATAACAGGGACAGTCAAGAGGAAGCTGCCTTCCAGGCTGT
GA

Translation (303 aa):
MAHYHDNYGKNDEVEFVRTGYGKDMVKVLHIQRDGKYHSIKEVATSVQLTLRSKKDYLHGDNSDIIPTDT
IKNTVHVLAKLRGIRNIETFAMNICEHFLSSFNHVTRAHVYVEEVPWKRFEKNGIKHVHAFIHTPTGTHF
CEVEQMRNGPPVIHSGIKDLKVLKTTQSGFEGFLKDQFTTLPEVKDRCFATQVYCKWRYQRRDVDFEAIW
GAVRDIVLQKFAGPYDKGEYSPSVQKTLYDIQVLSLSQLPEIEDMEISLPNIHYFNIDMSKMGLINKEEV
LLPLDNPYGKITGTVKRKLPSRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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