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Report for CCDS22083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22083.1 Public Mus musculus 8 Timm44 23 108 98 CCDS HistoryNCBI Gene:21856Re-query CCDS DB by CCDS ID:22083.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003029.13 ENSMUSP00000003029.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003029.13Link to Ensembl Protein Viewer:ENSMUSP00000003029.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003029Re-query CCDS DB by Protein ID:ENSMUSP00000003029
Original member Current member NCBI NM_011592.2 NP_035722.2 Accepted alive Link to Nucleotide Sequence:NM_011592.2Link to Protein Sequence:NP_035722.2Re-query CCDS DB by Nucleotide ID:NM_011592Re-query CCDS DB by Protein ID:NP_035722Link to BLAST:NP_035722.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035722.2 452 O35857 452 100% 0 0

Chromosomal Locations for CCDS 22083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4260136 4260255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4260512 4260622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4261908 4261997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4265226 4265276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4266556 4266680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4266770 4266862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4267255 4267340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4267637 4267776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4267864 4268013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4268300 4268380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4269855 4270025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4274137 4274232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4275843 4275887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGGCGGCGGCAGCTCTGCGGGGTGGCTGGTGCCGCTGTCCGCGGAGGTGCCTAGGCAGCGGAATCCAAT
TTCTCTCCAGCCACAACCTACCCCATGGTTCAAGCTACCAGATAAGCCGGCCAGGAAGAGAGCTGACACT
GACCAAATCTTATTCTTCTGGGAGCAGAAAAGGGTTTTTGTCAGGCTTGCTAGATAACATCAAACAAGAA
TTAGCCAAAAACAAAGAGATGAAAGAAAGTATAAAAAAGTTCCGAGATGAGGCCAAGAAGCTAGAAGAGT
CGGATGCTCTCCAGGAAGCCAGAAGGAAGTATAAATCCATCGAATCAGAAACTGTGCGTACCAGTGAAGC
AATAAAAAAGAAGCTTGGAGAATTAACAGGGACAGTGAAGGAGAGTCTTGATGAAGTCAGTAAGAGTGAC
CTTGGCCGGAAGATCAAGGAGGGGGTAGAAGAGGCCGCCAGGACAGCCAAGCAGTCAGCGGAGTCAGTGT
CCAAGAGCGGGGAGAAGCTGGGCAAGACGGCAGCCTTCAAAGCCATCTCCCAGGGTGTAGAGTCAGTGAA
GAAGGAGCTTGACGAGAGCGTGCTTGGACAGACGGGGCCCTACCGCCGGCCCGAGCGGCTCCGGAAAAGG
ACAGAGTTTGCTGGAGCAAAATTCAAAGAAAGCAAAGTGTTCGAGGCTAATGAGGAAGCATTAGGGGTTG
TGCTACACAAGGACTCCAAGTGGTACCAGCAGTGGAAGGACTTCAAAGATAACAACGTTGTATTCAACCG
CTTCTTTGAGATGAAGATGAAGTATGATGAAAGTGACAATGTCCTCATCCGGGCGTCGCGGGCCTTAACC
GACAAGGTCACTGACTTGCTAGGAGGTCTTTTCTCAAAGACAGAAATGTCAGAGGTGCTAACGGAGATCC
TGAGAGTGGACCCAACCTTTGACAAGGACCACTTTCTTCATCAGTGTGAGACTGACATCATCCCCAACAT
CCTAGAGGCCATGATTTCCGGGGAGCTTGACATTCTCAAAGACTGGTGCTATGAAGCTACCTACAGCCAG
CTGGCCCACCCTATCCAGCAGGCCAAGGCTCTGGGCTTCCAGTTCCACTCCCGAATTCTGGACATCAGCA
ATGTGGACCTGGCCATGGGCAAGATGATGGAGCAGGGCCCAGTGCTGATCGTTACCTTTCAGGCCCAGGT
GGTGATGGTGATCAAGAACTCCAAAGGCGAGGTGTATGATGGTGACCCGGACAAGGTGCAGCGAATGCTG
TACGTGTGGGCACTCTGCAGAGACCAGGAGGAGCTCAACCCTTATGCTGCCTGGCGCCTTCTGGACATCT
CAGCCTCCAGCACAGAGCAGATCCTCTGA

Translation (452 aa):
MAAAALRGGWCRCPRRCLGSGIQFLSSHNLPHGSSYQISRPGRELTLTKSYSSGSRKGFLSGLLDNIKQE
LAKNKEMKESIKKFRDEAKKLEESDALQEARRKYKSIESETVRTSEAIKKKLGELTGTVKESLDEVSKSD
LGRKIKEGVEEAARTAKQSAESVSKSGEKLGKTAAFKAISQGVESVKKELDESVLGQTGPYRRPERLRKR
TEFAGAKFKESKVFEANEEALGVVLHKDSKWYQQWKDFKDNNVVFNRFFEMKMKYDESDNVLIRASRALT
DKVTDLLGGLFSKTEMSEVLTEILRVDPTFDKDHFLHQCETDIIPNILEAMISGELDILKDWCYEATYSQ
LAHPIQQAKALGFQFHSRILDISNVDLAMGKMMEQGPVLIVTFQAQVVMVIKNSKGEVYDGDPDKVQRML
YVWALCRDQEELNPYAAWRLLDISASSTEQIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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