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Report for CCDS49336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49336.1 Public Mus musculus 13 Gcnt4 23 108 98 CCDS HistoryNCBI Gene:218476Re-query CCDS DB by CCDS ID:49336.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171324.2 ENSMUSP00000130496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171324.2Link to Ensembl Protein Viewer:ENSMUSP00000130496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171324Re-query CCDS DB by Protein ID:ENSMUSP00000130496
Original member NCBI NM_001166065.1 NP_001159537.1 Updated not alive Link to Nucleotide Sequence:NM_001166065.1Link to Protein Sequence:NP_001159537.1Re-query CCDS DB by Nucleotide ID:NM_001166065Re-query CCDS DB by Protein ID:NP_001159537
Current member NCBI NM_001166065.2 NP_001159537.1 Accepted alive Link to Nucleotide Sequence:NM_001166065.2Link to Protein Sequence:NP_001159537.1Re-query CCDS DB by Nucleotide ID:NM_001166065Re-query CCDS DB by Protein ID:NP_001159537Link to BLAST:NP_001159537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159537.1 455 E9Q649 455 100% 0 0

Chromosomal Locations for CCDS 49336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96946198 96947565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAAGATATTCAGATGTTGCTTTAAATACACTCTCCAGCAGAAACTCTTCATCCTCCTCTTAACCCTGT
GGCTGTTCTCCTTGTTGAAGCTCCTAAATGTGGGCAGGCTCCTCTTCCCTCAAAGAGACATTTACTTAGT
TGAATACTCCCTAAGTACATCACCATTTGTGAGGAACAGGTTCCCCGAGTCTGGGGATGCAGCCAGGGAC
AACGTTAACTGCTCGGGGGTCTACGAGCACGAGCCTTTGGAAATCGGCAAGAGTCTAGAAATCAGAAGAC
GGAGCATCATCGACTTGGAGGACGGTGATGTCGTGGCGATGACAAGTGACTGTGACGTTTATCAGACCCT
AAGGCAGTACCATGAAAAGCTGGTTTCAAGGGAGGAAGAGGACTTCCCCATAGCCTATTCGCTGGTCGTC
CACAAAGATGCCATTATGGTTGAGCGGTTGATCCGAGCTATTTACAACCAGCACAACCTTTACTGCATCC
ATTATGACCTGAAGTCACCGGACACGTTCAAAGCTGCCATGAACAACCTAGCTAAGTGCTTCCCCAATAT
CTTCATCGCTTCCAAATTAGAGACTGTGGAGTATGCTCACATATCCAGGCTCCAGGCCGATTGGAACTGC
TTATCAGACCTCCTCAAGTCTTCCGTTCAGTGGAAGTACGTCATCAACCTCTGTGGGCAAGACTTTCCCC
TAAAGTCAAATTTTGAATTAGTGACAGAGCTGAAAAGTCTCCAAGGAAGGAATATGTTAGAGACGGTGAG
ACCCCCCAGTGCTAAGACGGAGAGGTTCACCTACCATCATGAGCTCAGACAGGTGCCTTATGATTATATG
AAGCTACCAGTAAAGACGAACGTCTCCAAGGGGGCACCCCCTCATAACATTCAGGTATTTGTGGGCAGTG
CCTATTTTGTTTTAAGTCGAGCATTTGTTAAATATATTTTCAACAGCTCCCTCGTTGAAGACTTTTTTGC
CTGGTCTAAAGATACATATTCTCCTGACGAGCACTTTTGGGCCACCTTAATCCGGATACCAGGAATACCC
GGGGGAATTTCCAGTTCATCTCAGGACGTGTCTGACCTGCAGAGTAAGACCCGCCTGGTCAAATGGTTTT
ACTACGAAGGCTTTCTCTACCCCAATTGCACTGGCTCTCACCTTCGAAGTGTGTGTATTTACGGAGCTGC
AGAACTACGGTGGCTCTTAAACGAAGGGCATTGGTTTGCTAATAAGTTTGATTCTAAAGTTGACCCCATC
TTGATGAAATGTCTGGCAGAAAAACTTGAAGAGCAACAGAGAAAGTTGATTGCTTTGTCTTCAGAGAAGT
TCATGACAGAGGGAACCCGCCAAAGCCACACATTATAA

Translation (455 aa):
MKIFRCCFKYTLQQKLFILLLTLWLFSLLKLLNVGRLLFPQRDIYLVEYSLSTSPFVRNRFPESGDAARD
NVNCSGVYEHEPLEIGKSLEIRRRSIIDLEDGDVVAMTSDCDVYQTLRQYHEKLVSREEEDFPIAYSLVV
HKDAIMVERLIRAIYNQHNLYCIHYDLKSPDTFKAAMNNLAKCFPNIFIASKLETVEYAHISRLQADWNC
LSDLLKSSVQWKYVINLCGQDFPLKSNFELVTELKSLQGRNMLETVRPPSAKTERFTYHHELRQVPYDYM
KLPVKTNVSKGAPPHNIQVFVGSAYFVLSRAFVKYIFNSSLVEDFFAWSKDTYSPDEHFWATLIRIPGIP
GGISSSSQDVSDLQSKTRLVKWFYYEGFLYPNCTGSHLRSVCIYGAAELRWLLNEGHWFANKFDSKVDPI
LMKCLAEKLEEQQRKLIALSSEKFMTEGTRQSHTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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