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Report for CCDS25828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25828.1 Public Mus musculus 12 Nol10 23 108 98 CCDS HistoryNCBI Gene:217431Re-query CCDS DB by CCDS ID:25828.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046011.11 ENSMUSP00000035930.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046011.11Link to Ensembl Protein Viewer:ENSMUSP00000035930.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000046011Re-query CCDS DB by Protein ID:ENSMUSP00000035930
Original member Current member NCBI NM_001008421.1 NP_001008421.1 Accepted alive Link to Nucleotide Sequence:NM_001008421.1Link to Protein Sequence:NP_001008421.1Re-query CCDS DB by Nucleotide ID:NM_001008421Re-query CCDS DB by Protein ID:NP_001008421Link to BLAST:NP_001008421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008421.1 687 Q5RJG1 687 100% 0 0

Chromosomal Locations for CCDS 25828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 17348554 17348619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17350516 17350561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17352641 17352739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17355237 17355314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17356921 17356958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17358102 17358238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17359090 17359155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17361134 17361194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17362595 17362680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17368309 17368387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17369466 17369615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17373562 17373628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17379248 17379300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17402073 17402199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17404971 17405050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17405233 17405331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17406807 17406896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17416028 17416198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17416714 17416961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17424650 17424752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17429115 17429234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGCAGGTCTCCAGCCTCAACGAAGTGAAGATTTACAGCCTCAGCTGCGGCAAGTCTCTTCCCGAGTGGC
TTTCTGACAGGAAGAAGAGAGCACTGCAGAAGAAGAATGTCGATGTTCGTAGGAGAATTGAACTTATTCA
GGACTTCGAAATGCCTACTGTGTGTACTACTATCAAGGTGTCAAAAGATGGACAGTATATTTTAGCAACT
GGAACATATAAGCCTCGGGTCCGGTGTTATGACACATATCAGTTATCCCTGAAGTTTGAAAGGTGCTTGG
ATTCTGAAGTTGTCACCTTTGAGATTTTATCAGATGACTATTCAAAGATTGTCTTCTTACATAATGACAG
ATATATTGAATTTCACTCACAATCAGGCTTTTACTACAAAACCAGAATTCCCAAGTTCGGCCGAGACTTC
TCTTACCACTATCCATCCTGTGACTTGTACTTTGTAGGTGCAAGCTCTGAAGTTTATAGATTAAACTTAG
AACAAGGGCGGTACCTGAATCCTCTCCAGACGGACGCCGCGGAGAACAATGTTTGTGACATAAATGCAGT
GCATGGCTTGTTCGCCACAGGAACAATAGAGGGTCGAGTGGAATGCTGGGATCCAAGAGTAAGAAAAAGG
GTTGGCGTGTTAGACTGTGCATTAAATAGTGTCACAGCAGATTCAGAGATAAACAGCTTACCCACCATCT
CTGCATTGAAGTTTAATGGAGCCTTGAGCATGGCAGTTGGAACATCCACAGGGCAGGTGTTGTTATATGA
TCTTCGCTCGGATAAGCCGTTGCTAGTTAAGGATCACCAGTATGGGCTGCCGATTAAGTCAGTTCATTTC
CAGGATTCCCTAGATTTGGTTTTGTCTGCAGACTCTAGAATTGTCAAAATGTGGAACAAGGACTCCGGGA
AAATATTTACTTCGTTGGAGCCAGAACATGATCTTAATGATGTTTGCCTCTATCCCAGCTCAGGAATGCT
TCTTACTGCCAATGAATCCCCCAAGATGGGCATTTACTACATTCCGGTTTTGGGTCCTGCTCCCAGGTGG
TGTTCCTTCCTGGACAACTTGACAGAAGAGTTAGAAGAGAATCCAGAGAGCACAGTGTATGATGATTACA
AATTTGTCACCAAGAAAGACCTTGAAAATTTAGGGCTCACACATCTCATTGGATCACCTTTCCTCCGAGC
ATATATGCATGGGTTTTTCATGGATATCAGACTCTACCACAAGGTGAAATTGATGGTCAATCCATTTGCT
TATGAAGAATATAGGAAAGATAAAATTCGACAGAAGATAGAAGAAACACGTGCACAGAGAGTCCAATTAA
AGAAACTGCCAAAAGTTAACAAAGAACTGGCACTTAAATTAATTGAAGAGGAAGAGGAGAAACAAAAGTC
TACGCTGAAAAAGAAAGTTAAGAGCCTCCCTAATATCCTCACGGATGATCGATTTAAAGTTATGTTTGAG
AATCCCGACTTCCAGGTGGACGAGGAGAGTGAAGAGTTCAGGCTTCTCAACCCCCTCGTCTCGAGGATCA
GTGAGAAGAGGAAGAAGCAGCTGAGGCTCTTGGAGCAGCAGGAGCTCAAGGATGAAGAGGAGGAAGAACC
GGAAGGAAAACCCAGTGATGCAGAAAGTTCAGAGAGCTCAGATGATGAGAAAGGTTGGGTTGAAGAAGTC
AGGAAGCAGCGCAGACTCCTTCAGCAGGAAGAAAGAGTGAAGCGGCAGGAGCAACTGAAGGAGGACCAGC
AGACAGTCCTGAAGCCCCAGTTCTACGAGATCAAAGCAGGCGAAGAGTTCAGGAGCTTCAAAGAGTCTGC
CACCAAGCAGAGACTAATGAACAAAACTCTGGAAGATCGTTTGAAACTTGAAGCAAAACATGGGACATTG
AATGTATCGGACACCACTGTTGGCAGCAAGCAGTTGACATTTACTCTCAAGAGGTCTGAACAGCAAAAGA
AGCAACAGGAGGCTGAAAAACTGCATCGTCAGGAAAGGAAAAATCTGCGCAGGTCGGCCAGCCACCTGAG
GTCCAGACCCAGAAGAGGCCGGCCCTTTCACTGA

Translation (687 aa):
MQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKNVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILAT
GTYKPRVRCYDTYQLSLKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDF
SYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDAAENNVCDINAVHGLFATGTIEGRVECWDPRVRKR
VGVLDCALNSVTADSEINSLPTISALKFNGALSMAVGTSTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHF
QDSLDLVLSADSRIVKMWNKDSGKIFTSLEPEHDLNDVCLYPSSGMLLTANESPKMGIYYIPVLGPAPRW
CSFLDNLTEELEENPESTVYDDYKFVTKKDLENLGLTHLIGSPFLRAYMHGFFMDIRLYHKVKLMVNPFA
YEEYRKDKIRQKIEETRAQRVQLKKLPKVNKELALKLIEEEEEKQKSTLKKKVKSLPNILTDDRFKVMFE
NPDFQVDEESEEFRLLNPLVSRISEKRKKQLRLLEQQELKDEEEEEPEGKPSDAESSESSDDEKGWVEEV
RKQRRLLQQEERVKRQEQLKEDQQTVLKPQFYEIKAGEEFRSFKESATKQRLMNKTLEDRLKLEAKHGTL
NVSDTTVGSKQLTFTLKRSEQQKKQQEAEKLHRQERKNLRRSASHLRSRPRRGRPFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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