NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25771.1 Public Mus musculus 11 Cybc1 23 108 98 CCDS HistoryNCBI Gene:217370Re-query CCDS DB by CCDS ID:25771.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038709.13 ENSMUSP00000042277.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038709.13Link to Ensembl Protein Viewer:ENSMUSP00000042277.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038709Re-query CCDS DB by Protein ID:ENSMUSP00000042277
Original member Current member EBI ENSMUST00000106115.7 ENSMUSP00000101721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106115.7Link to Ensembl Protein Viewer:ENSMUSP00000101721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106115Re-query CCDS DB by Protein ID:ENSMUSP00000101721
Original member Current member NCBI NM_001252548.1 NP_001239477.1 Accepted alive Link to Nucleotide Sequence:NM_001252548.1Link to Protein Sequence:NP_001239477.1Re-query CCDS DB by Nucleotide ID:NM_001252548Re-query CCDS DB by Protein ID:NP_001239477Link to BLAST:NP_001239477.1
Original member Current member NCBI NM_001252549.1 NP_001239478.1 Accepted alive Link to Nucleotide Sequence:NM_001252549.1Link to Protein Sequence:NP_001239478.1Re-query CCDS DB by Nucleotide ID:NM_001252549Re-query CCDS DB by Protein ID:NP_001239478Link to BLAST:NP_001239478.1
Original member Current member NCBI NM_144832.2 NP_659081.1 Accepted alive Link to Nucleotide Sequence:NM_144832.2Link to Protein Sequence:NP_659081.1Re-query CCDS DB by Nucleotide ID:NM_144832Re-query CCDS DB by Protein ID:NP_659081Link to BLAST:NP_659081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239477.1 187 Q3TYS2 187 100% 0 0
NP_001239478.1 187 Q3TYS2 187 100% 0 0
NP_659081.1 187 Q3TYS2 187 100% 0 0

Chromosomal Locations for CCDS 25771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121224112 121224232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121224549 121224693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121225804 121225900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121226769 121226842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121227243 121227284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121228328 121228412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGTATATGCAGGTGGAGACACGCACCAGCACCCGCCTCCATCTGAAGAGGGCTCCAGGCATCCGGTCTT
GGTCCCTGCTGGTCGGAATATTATCCACTGGCCTGGCTGCTGCCTATTACAGTGGAGATAGTCTGGGCTG
GAAGCTCTTCTATGTCACAGGCTGCCTATTTGTGGCTGTACAGAACTTGGAAGACTGGGAGGAGGCCATT
TTCAACAAGAACACTGGGAAGGTCATCTTAAAAACATTCAGCCTCTACAAGAAGCTGCTGACTCTTCTCA
GAGCGGGCCACGATCAAGTGGTGGTTCTGTTGAAAGACATCCAGGATGTGAATGTGGAGGAGGAAAAGGT
CCGTTACTTTGGGAAGGGCTACATGGTGGTGCTCCGGTTTGCAACAGGCTTCTCCCACCCTCTCACTCAG
AGTGCAGTCATGGGCCGACGCAGTGATGTGGAAGCCATTGCCAAACTCATCACTAGCTTCTTGGAGCTGC
ACCGCCTGGAGAGCCCCTCAGAACGGTCACAGAGCAGCGACAGTGAACCTGATGGCCCTGGTGGCCAGAG
TTGA

Translation (187 aa):
MYMQVETRTSTRLHLKRAPGIRSWSLLVGILSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAI
FNKNTGKVILKTFSLYKKLLTLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQ
SAVMGRRSDVEAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH