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Report for CCDS24975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24975.1 Public Mus musculus 11 Wscd1 23 108 98 CCDS HistoryNCBI Gene:216881Re-query CCDS DB by CCDS ID:24975.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021168.13 ENSMUSP00000021168.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021168.13Link to Ensembl Protein Viewer:ENSMUSP00000021168.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021168Re-query CCDS DB by Protein ID:ENSMUSP00000021168
Original member Current member EBI ENSMUST00000108510.1 ENSMUSP00000104150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108510.1Link to Ensembl Protein Viewer:ENSMUSP00000104150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108510Re-query CCDS DB by Protein ID:ENSMUSP00000104150
Original member Current member EBI ENSMUST00000108511.7 ENSMUSP00000104151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108511.7Link to Ensembl Protein Viewer:ENSMUSP00000104151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108511Re-query CCDS DB by Protein ID:ENSMUSP00000104151
Original member Current member NCBI NM_001357960.1 NP_001344889.1 Accepted alive Link to Nucleotide Sequence:NM_001357960.1Link to Protein Sequence:NP_001344889.1Re-query CCDS DB by Nucleotide ID:NM_001357960Re-query CCDS DB by Protein ID:NP_001344889Link to BLAST:NP_001344889.1
Original member Current member NCBI NM_001357965.1 NP_001344894.1 Accepted alive Link to Nucleotide Sequence:NM_001357965.1Link to Protein Sequence:NP_001344894.1Re-query CCDS DB by Nucleotide ID:NM_001357965Re-query CCDS DB by Protein ID:NP_001344894Link to BLAST:NP_001344894.1
Original member Current member NCBI NM_177618.4 NP_808286.2 Accepted alive Link to Nucleotide Sequence:NM_177618.4Link to Protein Sequence:NP_808286.2Re-query CCDS DB by Nucleotide ID:NM_177618Re-query CCDS DB by Protein ID:NP_808286Link to BLAST:NP_808286.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344889.1 572 Q80XH4-1 572 100% 0 0
NP_001344894.1 572 Q80XH4-1 572 100% 0 0
NP_808286.2 572 Q80XH4-1 572 100% 0 0

Chromosomal Locations for CCDS 24975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 71759849 71760266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71766789 71766903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71768629 71768813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71771853 71771974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71783258 71783417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71784269 71784433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71787718 71787918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71788669 71789021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGCCAAACCTTTCTTCAGACTCCAGAAGTTTCTCCGCAGAACACAGTTCCTGCTACTCTTCCTCACGG
CCGCCTACCTGATGACCGGCAGCCTGCTGCTCCTGCAGCGGGCCAGAGTGGCCCTCCCACAGGCCCTCCG
GGCTCCCGGCAGCCTGCAGGCCTTACCAGTGGCCACCGTTGCACTGGGTGTGGGTCTACTGGACGGCAGG
AGCCTTCGTGATCCCCACAGTAGTCCTGACCTACTACTTGATGTGGACACACTGAGGAGTCCTCTAGCCC
GACTACCACCTGGAATCCGCTGGCCCCGGAGGAACCGCAGCTCGCTGCGGCGGCGTTGGCTCCACCACCT
CACCAGTGACCCGCAGGGGCCTCCCACCCTGAGTCCGGAGGCCTCTGGACCAGCCAACCATAATAGAGGC
AATTACCTGGGATGCTTCAGTGAGGAGGGCCAGGAGAGAACTCTGAAGGGAGCAGTGTTTTACGACTTGA
GAAAGATGACCGTGTCACACTGCCAGGATGCCTGTGCTGAGCGGTCTTATGTCTATGCTGGCTTGGAGGC
TGGTGCAGAGTGCTACTGTGGGAATAGGCTGCCGGCCACACGTGTCAGCCTGAAGGAGTGCAATCAGGAG
TGCAAGGGAGAGAAAGGCTCCATGTGCGGGGCTGTGCGCCGGCTCTCTGTGTACAGCGTGGGGCTGCAGC
AGCCAGGCTCCAAGAAGCGGCGCACTGCCACCTACCGAGGGTGCTTCCCACTGCCTGAGAATGTCACCCA
CACCTTCTCCTCCTCCATGACACAGGCCAACATGACTGTGGAGACGTGTTCTGGATTTTGTTCCCAGAAA
GAGTTTCCTCTGGCCATCCTCCGAGGCTGGGATTGCTATTGTGCCTACCCTACCCCCCAGTTCAGCCTGC
GGGATGCTGTGGATGGAGCACTGTGCAGTCAGGCCCCAGAGACACAAGGGCTACCTGGCTACTGTGAGGT
CTACCAGACACCCGTGCAAGACACCCGGTGCACAGACAGGAAGTTCCTGCCCGACAAGTCTAAGGTGTTT
GTGGCTCTGTCGAGCTTCCCTGGAGCTGGGAACACATGGGCAAGGCACCTGATCGAGCACGCCACTGGCT
TCTACACGGGAAGCTACTACTTCGACGGAACCCTGTACAACAAGGGGTTCAAGGGTGAGAAGGACCATTG
GCGGAGCCGGCGCACCATCTGTGTGAAGACGCACGAGAGTGGCCGGAGGGAGATTGAGATGTTTGACTCG
GCCATCCTGCTGATCCGGAACCCCTACCGGTCCCTAGTTGCTGAATTCAACAGGAAATGCGCTGGACACT
TGGGCTATGCCCCTGACCGCAATTGGAAGAGCAAAGAATGGCCGGAGTTTGTGAATAGCTATGCCTCCTG
GTGGTCCTCACATGTCCTAGACTGGCTCAAGTATGGGAAGCGGCTGCTGGTCGTGCACTATGAGGAGCTG
CGGCACAGCCTGGTGCCCACACTTCGGGAGATGGTGGCTTTCCTCAATGTGTCCGTGAGCGAGGAGCGGC
TTCTCTGTGTGGAGAACAACAAAGAGGGCAGCTTCAGGAGGCGTGGCCGGCGCCCTCATGACCAGGAGCC
CTTCACCCCTGAGATGAAGGACTTGATCAATGGCTATATCAGGACAGTGGACCAGGCCTTGCGTGACCAC
AACTGGGCTGGGCTGCCCAGAGAGTATGTGCCCAGATGA

Translation (572 aa):
MAKPFFRLQKFLRRTQFLLLFLTAAYLMTGSLLLLQRARVALPQALRAPGSLQALPVATVALGVGLLDGR
SLRDPHSSPDLLLDVDTLRSPLARLPPGIRWPRRNRSSLRRRWLHHLTSDPQGPPTLSPEASGPANHNRG
NYLGCFSEEGQERTLKGAVFYDLRKMTVSHCQDACAERSYVYAGLEAGAECYCGNRLPATRVSLKECNQE
CKGEKGSMCGAVRRLSVYSVGLQQPGSKKRRTATYRGCFPLPENVTHTFSSSMTQANMTVETCSGFCSQK
EFPLAILRGWDCYCAYPTPQFSLRDAVDGALCSQAPETQGLPGYCEVYQTPVQDTRCTDRKFLPDKSKVF
VALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDS
AILLIRNPYRSLVAEFNRKCAGHLGYAPDRNWKSKEWPEFVNSYASWWSSHVLDWLKYGKRLLVVHYEEL
RHSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRPHDQEPFTPEMKDLINGYIRTVDQALRDH
NWAGLPREYVPR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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