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Report for CCDS41036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41036.1 Public Mus musculus X Tbl1x 23 108 98 CCDS HistoryNCBI Gene:21372Re-query CCDS DB by CCDS ID:41036.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088217.11 ENSMUSP00000085549.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088217.11Link to Ensembl Protein Viewer:ENSMUSP00000085549.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088217Re-query CCDS DB by Protein ID:ENSMUSP00000085549
Original member NCBI NM_020601.2 NP_065626.1 Updated not alive Link to Nucleotide Sequence:NM_020601.2Link to Protein Sequence:NP_065626.1Re-query CCDS DB by Nucleotide ID:NM_020601Re-query CCDS DB by Protein ID:NP_065626
Current member NCBI NM_020601.3 NP_065626.1 Accepted alive Link to Nucleotide Sequence:NM_020601.3Link to Protein Sequence:NP_065626.1Re-query CCDS DB by Nucleotide ID:NM_020601Re-query CCDS DB by Protein ID:NP_065626Link to BLAST:NP_065626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065626.1 527 Q9QXE7 527 100% 0 0

Chromosomal Locations for CCDS 41036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 77641450 77641507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77643411 77643556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77646208 77646469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77647792 77647924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77648252 77648393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77648654 77648717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77648823 77648920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77649873 77649933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77650369 77650490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77652764 77652838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77653214 77653341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77655406 77655571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77658701 77658802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77659715 77659741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGAGCATTACCAGCGACGAGGTGAACTTTCTGGTATATCGCTACCTCCAGGAATCAGGTTTTTCCCACT
CTGCCTTCACGTTTGGGATCGAAAGTCACATTAGCCAGTCCAACATCAATGGTACACTAGTGCCACCGGC
TGCCCTAATCTCCATTCTTCAGAAAGGACTGCAGTATGTGGAGGCGGAGATCAGCATCAACGAGGATGGC
ACGGTATTTGATGGGCGTCCCATTGAGTCCCTATCGTTAATTGATGCTGTGATGCCCGATGTGGTACAGA
CAAGACAGCAAGCTTTTCGGGAGAAACTTGCCCAGCAGCAAGCCAATGCAGCAGCTGCAGCAGCAGCAGC
TGCAGCCACAGCCACAAGCACAGCGGCTACAACACCAGCAGCTGCTGCTCAGCAAAACCCACCAAAGAAT
GGAGAAGCCACCGTGAATGGGGAAGAAAATGGAGCCCATGCAATAAATAATCACTCAAAGCCAATGGAAA
TAGATGGAGACGTTGAAATTCCACCGAGTAAAGCCACAGTCCTTCGAGGCCATGAGTCTGAGGTCTTCAT
TTGTGCCTGGAATCCTGTTAGTGACCTACTTGCTTCTGGATCTGGAGACTCCACTGCGAGGATATGGAAC
CTTAATGAGAACAGCAACGGGGGCTCCACACAGCTTGTGCTGAGGCACTGTATACGTGAAGGTGGACATG
ATGTTCCCAGTAATAAGGATGTCACTTCATTGGACTGGAATAGCGATGGAACACTGTTGGCAACAGGTTC
CTATGATGGTTTTGCAAGAATATGGACAGAAGATGGTAACCTAGCCAGCACCTTAGGTCAACATAAAGGT
CCCATCTTTGCTTTGAAGTGGAACAAAAAGGGGAATTATATTTTGAGTGCTGGTGTAGACAAGACAACAA
TAATTTGGGACGCTCACACAGGAGAAGCCAAACAACAGTTTCCTTTTCATTCAGCACCTGCCCTTGATGT
GGACTGGCAGAACAACACTACCTTTGCCTCATGCAGCACAGACATGTGCATTCATGTGTGCAGGCTTGGC
TGTGATCGCCCAGTCAAAACCTTCCAAGGACATACTAATGAGGTCAATGCTATCAAATGGGATCCTTCTG
GAATGTTACTAGCCTCCTGCTCTGATGACATGACATTAAAGATCTGGAGTATGAAGCAGGATGCATGTGT
CCATGACCTCCAGGCTCACAGCAAAGAGATATATACCATCAAGTGGAGTCCCACAGGACCAGCCACCAGC
AACCCGAACTCCAACATCATGTTAGCAAGTGCTTCATTTGACTCTACGGTTCGACTGTGGGATGTGGAGC
GAGGTGTTTGCATCCACACTCTGACCAAGCATCAGGAGCCTGTCTATAGTGTAGCGTTCAGCCCCGACGG
GAAGTATTTGGCCAGTGGATCTTTTGACAAGTGTGTCCATATCTGGAATACTCAGAGTGGAAGTCTCGTC
CACAGCTACCGAGGAACAGGCGGCATATTTGAGGTGTGCTGGAATGCTCGAGGAGACAAAGTGGGTGCCA
GCGCATCTGATGGCTCCGTCTGTGTTTTAGATCTCCGAAAGTAA

Translation (527 aa):
MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDG
TVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQANAAAAAAAAAATATSTAATTPAAAAQQNPPKN
GEATVNGEENGAHAINNHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWN
LNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKG
PIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLG
CDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATS
NPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLV
HSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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