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Report for CCDS70464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70464.1 Public Mus musculus 13 Ddx46 23 108 98 CCDS HistoryNCBI Gene:212880Re-query CCDS DB by CCDS ID:70464.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172272.7 ENSMUSP00000133245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172272.7Link to Ensembl Protein Viewer:ENSMUSP00000133245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172272Re-query CCDS DB by Protein ID:ENSMUSP00000133245
Original member Current member EBI ENSMUST00000223736.1 ENSMUSP00000153328.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223736.1Link to Ensembl Protein Viewer:ENSMUSP00000153328.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223736Re-query CCDS DB by Protein ID:ENSMUSP00000153328
Original member Current member NCBI NM_001282055.1 NP_001268984.1 Accepted alive Link to Nucleotide Sequence:NM_001282055.1Link to Protein Sequence:NP_001268984.1Re-query CCDS DB by Nucleotide ID:NM_001282055Re-query CCDS DB by Protein ID:NP_001268984Link to BLAST:NP_001268984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268984.1 1032 Q569Z5-1 1032 100% 0 0

Chromosomal Locations for CCDS 70464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55635179 55635195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55638026 55638214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55639791 55639934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55645371 55645467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55647627 55647792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55650415 55650566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55652044 55652157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55652913 55653078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55653602 55653722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55654004 55654179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55655009 55655130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55659020 55659098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55660717 55660799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55663219 55663383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55663779 55663941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55666187 55666380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55669712 55669849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55670204 55670353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55673941 55674117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55675896 55676114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55676770 55676914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55677521 55677594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55678784 55678831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGGGCCGGGAGTCTCGCCACTACCGAAAACGCTCAGCATCTCGAGGTCGTTCTGGAAGTCGATCGAGGA
GTCGCTCACCCTCTGACAAAAGAAGCAAACGTGGGGATGACAGACGCTCTCGGAGCAGAGACAGAGACCG
GAGGAGAGAGAGGTCTCGGAGTAGGGACAAGAGAAGATCTCGGTCAAGGGACAGGAAGCGCCTGAGGCGC
TCCAGAAGTAGAGAGCGAGACAGAAGCCGAGAGCGGAGAAGATCTCGGAGCAGAGATAGAAGGCGCTCAA
GGAGTCGAAGCCGGGGCAGGCGGTCCCGGTCCTCCAGTCCTGGCAGCAAAACCAAGAAGACTGAGAACAG
GTCTAGGTCCAAAGAGAAAGCAGAAGGTGGGGACAGCTCCAAGGAGAAGAAAAAGGACAAGGATGACAAG
GAGGACGAGAAAGAGAAGGATGCTGGGAACTTTGACCAGAATAAACTGGAAGAAGAAATGAGAAAACGGA
AAGAAAGAGTTGAAAAATGGCGCGAAGAGCAGCGTAAGAAGGCTATGGAGAACATAGGAGAGCTGAAGAA
GGAGATTGAGGAGATGAAGCAGGGGAAGAAGTGGAGCTTGGAGGACGACGACGATGATGAAGATGATCCT
GCCGAGGCTGAGAAGGAAGGGACTGAAATGGAGGACGAGGAGCTGGACCCATTAGACGCCTACATGGAAG
AAGTGAAGGAAGAGGTAAAAAAGTTTAACATGAGGAGCGTGAAAGGCGGCGCAGGAAATGAGAAGAAGTC
TGGGCCAACAGTCACAAAAGTTGTCACTGTGGTGACCACCAAGAAAGCAGTAGTAGACGCGGATAAGAAG
AAGGGGGAACTCATGGAGAATGACCAGGACGCCATGGAGTATTCCTCAGAGGAGGAGGAAGTTGACCTTC
AAACGGCCCTCACAGGCTACCAGACAAAACAGAGAAAACTTCTAGAGCCAGTTGATCATGGAAAAATTGA
ATATGAGCCATTCAGAAAAAACTTTTATGTTGAAGTTCCAGAATTAGCAAAAATGTCTCAAGAAGAGGTG
AATGTGTTTCGATTGGAAATGGAGGGCATTACAGTTAAAGGAAAAGGTTGCCCGAAACCAATTAAATCAT
GGGTCCAGTGTGGAATTTCCATGAAGATACTAAATTCCCTCAAAAAGCATGGCTATGAAAAGCCAACACC
AATCCAAACTCAAGCGATTCCTGCTATAATGTCTGGACGAGATTTGATTGGCATTGCCAAGACAGGAAGT
GGAAAAACCATTGCTTTTCTTTTGCCCATGTTTAGACACATCATGGATCAGAGGTCATTAGAAGAAGGAG
AGGGACCAATAGCTGTCATCATGACTCCAACTCGAGAGCTGGCTTTACAAATCACTAAAGAATGTAAGAA
GTTTTCGAAGACCTTGGGACTGAGAGTGGTCTGTGTGTATGGAGGGACAGGAATCAGCGAGCAGATTGCT
GAGCTGAAAAGAGGTGCTGAAATTATTGTTTGCACACCTGGTCGAATGATTGACATGTTAGCGGCTAACA
GTGGTCGGGTCACAAATCTTCGAAGAGTGACATATGTTGTTTTAGATGAAGCAGACAGAATGTTTGACAT
GGGTTTTGAACCACAGGTCATGCGCATTGTGGATAACGTTCGTCCTGACCGACAGACAGTTATGTTTTCA
GCCACTTTCCCTAGAGCTATGGAGGCTTTGGCCCGCAGGATCCTGAGCAAACCTATTGAAGTGCAGGTTG
GAGGCAGGAGTGTGGTTTGCTCCGATGTGGAACAGCAGGTGATTGTGATTGAAGAAGAAAAGAAATTCTT
GAAATTGCTGGAGCTTTTAGGCCATTATCAGGAGTCAGGATCTGTCATTATATTTGTGGATAAGCAGGAA
CACGCAGATGGTCTTCTGAAGGACTTGATGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAGGTATTG
ATCAATATGACAGGGACAGTATCATAAATGACTTTAAGAATGGAACCTGCAAGCTCCTCGTTGCCACATC
TGTTGCAGCTCGTGGTCTCGATGTGAAACATCTAATTCTTGTAGTGAATTACAGCTGCCCCAATCATTAT
GAAGATTATGTGCACAGAGCTGGGCGGACTGGAAGAGCGGGCAACAAGGGTTATGCCTACACCTTCATCA
CAGAGGATCAAGCTCGATATGCTGGTGACATCATTAAAGCTCTTGAATTGTCAGGGACCGCAGTGCCTCC
TGACCTAGAAAAACTCTGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGGAAAAATAATTAAAAAGAGT
AGTGGCTTCTCTGGCAAGGGATTCAAGTTTGATGAAACAGAACAGGCTTTAGCCAATGAGAGGAAAAAGC
TGCAGAAAGCTGCTCTTGGCCTGCAAGATTCTGATGACGAGGATGCTGCAGTTGATATTGATGAACAGAT
TGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGACATGGCTGCACCCGGCACATCCAGCGTGCCCGCG
CCCACTGCAGGCAATGCTGAGAAGCTAGAAATCGCCAAGAGATTGGCTCTCAGAATCAACGCTCAGAAGA
ACCTGGGCATCGAGTCTCAGGTAGATGTGATGCAGCAGGCCACCAACGCCATCCTCAGAGGTGGCACTAT
CCTGGCTCCCACTGTGTCTGCGAAAACCATTGCAGAGCAGCTTGCTGAGAAGATCAATGCCAAGCTCAAC
TACGTGCCTTTGGAGAAGCAGGAGGAAGAGAGACAGGAGGGTGGGCAGAGCGAGTCTTTCAAGAGATACG
AGGAAGAATTAGAAATTAATGACTTCCCACAGACTGCGAGGTGGAAAGTCACCTCAAAGGAAGCCCTGCA
GAGGATCAGCGAGTACTCTGAGGCCGCCATCACCATCAGGGGCACCTACTTCCCTCCCGGCAAGGAGCCC
AAGGAAGGAGAGCGCAAGATCTACCTGGCCATCGAAAGTGCCAACGAGCTGGCTGTGCAGAAAGCAAAGG
CAGAGATCACCAGGCTCATAAAAGAGGAACTGATCCGACTGCAAAATTCATACCAACCAACCAACAAAGG
ACGATACAAAGTATTATAA

Translation (1032 aa):
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRR
SRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKTKKTENRSRSKEKAEGGDSSKEKKKDKDDK
EDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDP
AEAEKEGTEMEDEELDPLDAYMEEVKEEVKKFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDADKK
KGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEV
NVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIA
ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFS
ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQE
HADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHY
EDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKS
SGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQLAEKINAKLN
YVPLEKQEEERQEGGQSESFKRYEEELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEP
KEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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