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Report for CCDS52710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52710.1 Public Mus musculus 8 Tarbp1 23 108 98 CCDS HistoryNCBI Gene:212728Re-query CCDS DB by CCDS ID:52710.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170518.2 ENSMUSP00000129815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170518.2Link to Ensembl Protein Viewer:ENSMUSP00000129815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170518Re-query CCDS DB by Protein ID:ENSMUSP00000129815
Original member Current member NCBI NM_001159907.1 NP_001153379.1 Accepted alive Link to Nucleotide Sequence:NM_001159907.1Link to Protein Sequence:NP_001153379.1Re-query CCDS DB by Nucleotide ID:NM_001159907Re-query CCDS DB by Protein ID:NP_001153379Link to BLAST:NP_001153379.1

Chromosomal Locations for CCDS 52710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 126426972 126427140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126427423 126427559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126427818 126427942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126428075 126428266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126428881 126429052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126430822 126430903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126433848 126434044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126434798 126434884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126436703 126436852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126438803 126438913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126440754 126440874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126443930 126444001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126444135 126444325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126447040 126447228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126447321 126447582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126448213 126448427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126450664 126450825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126452233 126452330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126452790 126452962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126453799 126453895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126456069 126456204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126456477 126456566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126457664 126457760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126459037 126459172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126461338 126461435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126463183 126463235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126467034 126467182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126470019 126470088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126471302 126471399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 126474255 126475065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4740 nt):
ATGGAGCGGGTGTTGGCGGACGCGCTTCTAACGCAGAGTCGGGAGCCCGGCGAGTTGCTGGGCGCGCTGT
GCGGCGGGGAGGCGAGTGCGGAGCGGGCGGAGACCCTGCGCCTGGTGCTGCAGCGGCTGGAGGAGCGCGG
CGCGGGCGCCGGCGCGCTGGCCAAGGCGGCACACGAGGTGGCCAGGGACCACCTGGTGCCCTTACTGCAC
GCGTCCCAGGGCGGAGGGCCTGCGAGGCCCCGCGTGCTCCGAGCGGCGAGTGCGGCGCTGCGCTCGTGCG
CGCGCCTGGCAGGACCGGAGCTGGCAGTCACTCTGGCCGAAGAAGCGCTGCGCGAGCTGCCGAGCGCGCC
AGCCGTGGAGCTGCTGGCCGCCGTGGCGCCGTGTTTACGCGCGCCGGAGGATGCCCCGCTGCTGCGTCGC
CTGGGGCGCGCGTCTGTGGAGCTGGCGCTGGCCGGGGACGCGCCGCCGGCCGTGGGAGCGCGCCTGCTGC
CCGCGCTGGCACAGAGCGCAGAACCGGCTCTGCGTGCGGCGTGGGACGCGCTGAGCTCCGCGGGACCGGG
AGCTGAGGGCAGCACTGGGCCAGAACTGCTGGTGCTGAGCGCACTGGCCGAGAAGCTGCTGACCAACCAT
GAGCGCCACGGGGATCTCGACGCCCGTCTCTGCGGCCGCTTCTGGAGAACCGTCCAGGCGGGGCTGGGCC
GCGCGCAGGACGGGCTCACGCGAAAGCGCGCGCGCTACCTGCTGCAGAGGGCTGTACAGGTGTCTGCAGA
GCTGGCGGTGGACTGCTCCTGCAGCCCCCAGGACACAAAAGGTCCGAGCCTATTCTGGTGGTCTGAGAAG
AGAAAAGATGAGCTCCTAAAGTTTTGGGAAAACTATATCTTGATCATGGAAATTTTGGAAGGAAACCAGA
TACATGTCATAAAGCCAGCCTTACCAAAGCTAAACAGGCTGTTTGAATGCGCAGTGTCAGAGGAGAATGG
CTGCTGGCTCTTCCATCCCTCCTGGCACACGTGCATCTACAAAAGAATGTTTGAAAGCGAGAATAAAATT
CTGGCCAAAGAAGGCGTGATCCACTTCTTGGAGCTGTATGACGTGAAATCGCTTCCTTATTCCCCGGAAC
TCTCAGAGTTTATTACTGGCCCGCTGATGGATGCCCTCTCAGAGAGCTGTCTGTACAGCAGGTCCCCAGG
GCAGCCGTTGGGAAGTGACTCTCCCCTGGGATTAAAGCTGCAGAAGTTTCTAGTCACTTATACTTCCCTT
CTTCCAGAAGAAACAAAGAGTTGTTTCCTGTTAAAGCTCATTCAGAGAATGGCGGACAGACACTGGTGTG
CAGTGCCGGTTTTGTTCCTGTCCAGGGCTTTGGCAAGCATACCCAGCTGTAAGGCCCTGGGTGGAGAAGG
TCTTCTTGCCCTCAGGGATGTTCTCCAGCGCACCATGATCACACACCAGGTCCTCCTGAGAGGAGCAGCT
CAGTGCTACCTTCTTCAGACAGCCATGCGTCTGGTGGACGTGGAGAAAGTATCTCTTTCTGACATCTCAG
CTTTTCTCTTGTCTCTGAGACAAGAGGAGTCCCTCGGACGTGGGACGGTGCTGTGGACAGAGCTCTGTGA
CTGGCTACGTGTCAATGAAAGATACTTTAAGCAATCCTCACTTGGTGGCTCTGATGGACAGGAGGCGTCA
TTAAATGCTTACGTGAAGAACCTAGTTCAGGAGTTCGTGAAGTCTCCTGGTTGGGAAAAAGAAAGCAGCT
TCATGCCAGACTGGCTGGACGCCAGGCTGACAGCGCTGATGGTCCTGCTGGCTGTGGACGTGGAAGGACT
GAAGACCAAGTTCAGGGAAAAGCAGAGGACTCAGAACGTGTTGAGGATCTTCCTAGACCCCTTGCTGGAT
GCCCTAGGGAAGCTCGGCACCAATGCCTACATGCCCTTGCTGAGGACTGACCGGTGCCTCCAGCTGCTGG
TGAGGTTGCTGCATTCTTGTGTGCCAAGACGTCCCGGTGCCCAGGATGATGAGGTATCCACTGCCCTCCA
GGGCTCCATCATGTCTGCTTCAGAGAGCGTGTCTCAGTTTGTGCTCAGGAGACTCACCATGAACGAGCTG
CAGGATGTGGCGGATCTGGACCGATGTCAGCTCTACCTGACGGTGTTGTCTGAGCTCATGAGTCTCCAGG
TTAAGCTGGGCTGGAAAGCAGGCAACCCCATCAGCCGGGTCCTTTCTCCTTTGAAAAACGCATGTGTTCG
CCATCTGCAGGAGGCTGAGGACAGACAGGAGCCGACCTTGAGTCATCAGGTACAGAGAGTGGTCAGCATG
GCCGCCCTGGCAGCTCTGTGTGAGGCTGTGGACCAGTACCCAGTGCTGCAGCCTGACTCCCCCAATGCTG
AGCCTGTGGACAGGTTCCTGTCAGCTCTTCCACTCAATCACGTGCTGCAGAAGCCCCGATCAGAGGAGCA
GAGCATCGGTGTGTGTCCCCTGGAGAATGGCAGTGTCTTTGAAGAATCATTGTCTTCCAAAGGATGGGGG
AAAGTAGTTGCACAGTATCTACATGATCAGTGGGTCTGCCTCTCCTTCCTGCTGAGAAAGCACCACCACC
TCATTCCAAGCACGGAAAGTGACGTGCTGGAGGGCTTTCTCCCTACTGCTGAGACACCTGTGCAGGCCCT
GCAGGCAGCGCTGGACGTCCTCACCGTCCTCCCTGCTGGCCGCATCTTGCCTGTGTTCCGCTGCATGGAG
GTGCTAGTTCCCAAGCTCCTGACCTCCGAGGAGACCCTCTGCATAGAGTCCTTTGACGTGGCTTGGAAAA
TTATATCTTCCTTGAGCAACACACAGCTGACGTTCTGGCCTAATTTAAAGGCTTTTGTTCACTTTGTTTT
CGACCATGAGATTCTTACCATTGCTGCAAAACTCAAGGGCCAGGTGTACTTCAAAATAAAAGAGATTATG
TGCAAGATGATTGAAATGTCCTCCATAAAATCAGGTGTCTTCAATATTCTGATACGTCACTGCTGCCAGT
CATGGCTAGTGGCTGCTTCCGGCGTGTCCCAGGGGTCATTCTCCAGTGCTAAGGATTACAGTGAACTTGT
CCTGGAGGCTTGCGTGTTTGGAACAGTGTTTAGGCGCGATCAGAGACTTATTCAGGATGTCCAAACCTTC
ATAGAAAACCTTGGACAAGGCTGTGCAGCAAACGTCATCATTGAGAATGCTAAGAGAGAAGATTATTACG
TGAGAATCTGTGCCATCAAATTCTTGTGTCTGCTAGATGGCTCCGATGTGTCCCACAAGTTGTTCTTAGA
AGCTCTTGCCATCAAGCTCTTGGATAAGGATGAGTCAGCATCCAGGTCCAGAACTCGATACCATGAGAAC
TCCCTCCAGCACCGGGTGAAGAACCGTGTGTGGCAGACTCTGCTTGTCCTCTTCCCTGCATTTGATCAGA
ACTTCTTACATGGAATTATTGATAAGGTCTTTCACGCTGGCTTCACCAACAATCAAGCGTCCATAAAATA
TTTTATTGAGTGGCTTATTATATTGATTCTTCATAAATTCCCTGAGTTTCTTCCAAAGTTCTGGGCGTGT
TTTTCTTACGGTGAAGAAAAAATTAAGGCAAGCATTTGTACATTTTTATCTGTTTTATCACATTTGGACA
TCATTGTTCAGAATATTCCAGAAAAGAAGCTGGTTCTGAAGCAAGCTCTCACCGTTGCCCTCCAGTGGTG
TCTGAGTCACAATTTCAGTGTTCGGCTCTATGCTCTGGTAGCCCTCAAGAAGGCCTGGCATCTGTGTAAA
ACACTGCAGTTTGAGGAGTGTGGCGCCTGGACCGCAGTCATCGAGTGCAGCCTCAGCCAAGCAGAAAGCA
TGCACGGAGCAGGGAATGCCAGGAAGAACTGGCAGCGCATCCAGGACCATTTCTTCTTCTCCACCTTCCA
CCCCCTTAAGGACTACTGTCTGGAGACCATATTTTACACGCTCCCACGGCTCTCGGGTGTCACTGGAGAG
GAGTGGATCGCCTTGGATAAATTTGCCAACTTCACAGACATCCCTTCCAATGCAGGGTCCCAGTGGTACC
TGTCTGGGACTGCACTCGGTGAGCTGAGTCCAGGAGACTGGTCCCAGCAGGACCAAGGTTCTACTTTGGG
TGAAGCAGACAGCCAGTCAGAATGGGCTGATGTCCAGAAAAAAATCATCCCATGGGGACAAAGCGCTCTG
GAATCAGACCTGGAGCTCGAGTTTCAGGATCGGGCTGCCAAGCTCGGAAAGTCCATTAGCAGACTGATCG
TTGTGGCCTCACTCATCGACAAGCCGACCAACCTGGGAGGGCTGTGCAGGACCTGTGAGGTGTTCGGGGC
TGCAGTACTTGTTGTCGGCAGCCTTCAGTGTGTCAGCGATAGACAGTTCCAGCACCTCAGTGTGTCTGCA
GAGCAGTGGCTTCCTCTGGTGGAGGTGAGACCATCCCAGCTGATGAATTATCTGCAGCAGAAAAAGGCAG
AAGGCTACACTGTCATTGGCGTGGAGCAGACAGCGCAAAGCTCAGATCTGGCCCAGTACCGCTTCCCTGA
GAAGTCGCTGCTGCTGTTGGGAAACGAGCGGGAAGGAATCCCAGCCAACCTGATCCAGCAGCTGGATGTG
TGTGTGGAGATTCCTCAGCAGGGCATCATCCGCTCACTAAATGTGCATGTGAGCGGGGCTCTGCTGATTT
GGGAGTACACCAGACAGCAGCTGCTCGGGTGTGCGGAGCCACCATCCTGA

Translation (1579 aa):
MERVLADALLTQSREPGELLGALCGGEASAERAETLRLVLQRLEERGAGAGALAKAAHEVARDHLVPLLH
ASQGGGPARPRVLRAASAALRSCARLAGPELAVTLAEEALRELPSAPAVELLAAVAPCLRAPEDAPLLRR
LGRASVELALAGDAPPAVGARLLPALAQSAEPALRAAWDALSSAGPGAEGSTGPELLVLSALAEKLLTNH
ERHGDLDARLCGRFWRTVQAGLGRAQDGLTRKRARYLLQRAVQVSAELAVDCSCSPQDTKGPSLFWWSEK
RKDELLKFWENYILIMEILEGNQIHVIKPALPKLNRLFECAVSEENGCWLFHPSWHTCIYKRMFESENKI
LAKEGVIHFLELYDVKSLPYSPELSEFITGPLMDALSESCLYSRSPGQPLGSDSPLGLKLQKFLVTYTSL
LPEETKSCFLLKLIQRMADRHWCAVPVLFLSRALASIPSCKALGGEGLLALRDVLQRTMITHQVLLRGAA
QCYLLQTAMRLVDVEKVSLSDISAFLLSLRQEESLGRGTVLWTELCDWLRVNERYFKQSSLGGSDGQEAS
LNAYVKNLVQEFVKSPGWEKESSFMPDWLDARLTALMVLLAVDVEGLKTKFREKQRTQNVLRIFLDPLLD
ALGKLGTNAYMPLLRTDRCLQLLVRLLHSCVPRRPGAQDDEVSTALQGSIMSASESVSQFVLRRLTMNEL
QDVADLDRCQLYLTVLSELMSLQVKLGWKAGNPISRVLSPLKNACVRHLQEAEDRQEPTLSHQVQRVVSM
AALAALCEAVDQYPVLQPDSPNAEPVDRFLSALPLNHVLQKPRSEEQSIGVCPLENGSVFEESLSSKGWG
KVVAQYLHDQWVCLSFLLRKHHHLIPSTESDVLEGFLPTAETPVQALQAALDVLTVLPAGRILPVFRCME
VLVPKLLTSEETLCIESFDVAWKIISSLSNTQLTFWPNLKAFVHFVFDHEILTIAAKLKGQVYFKIKEIM
CKMIEMSSIKSGVFNILIRHCCQSWLVAASGVSQGSFSSAKDYSELVLEACVFGTVFRRDQRLIQDVQTF
IENLGQGCAANVIIENAKREDYYVRICAIKFLCLLDGSDVSHKLFLEALAIKLLDKDESASRSRTRYHEN
SLQHRVKNRVWQTLLVLFPAFDQNFLHGIIDKVFHAGFTNNQASIKYFIEWLIILILHKFPEFLPKFWAC
FSYGEEKIKASICTFLSVLSHLDIIVQNIPEKKLVLKQALTVALQWCLSHNFSVRLYALVALKKAWHLCK
TLQFEECGAWTAVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETIFYTLPRLSGVTGE
EWIALDKFANFTDIPSNAGSQWYLSGTALGELSPGDWSQQDQGSTLGEADSQSEWADVQKKIIPWGQSAL
ESDLELEFQDRAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVSA
EQWLPLVEVRPSQLMNYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQLDV
CVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAEPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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