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Report for CCDS18830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18830.1 Public Mus musculus 4 Ubxn10 23 108 98 CCDS HistoryNCBI Gene:212190Re-query CCDS DB by CCDS ID:18830.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105809.1 ENSMUSP00000101435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105809.1Link to Ensembl Protein Viewer:ENSMUSP00000101435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105809Re-query CCDS DB by Protein ID:ENSMUSP00000101435
Original member Current member EBI ENSMUST00000105810.7 ENSMUSP00000101436.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105810.7Link to Ensembl Protein Viewer:ENSMUSP00000101436.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105810Re-query CCDS DB by Protein ID:ENSMUSP00000101436
Original member Current member EBI ENSMUST00000105811.8 ENSMUSP00000101437.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105811.8Link to Ensembl Protein Viewer:ENSMUSP00000101437.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105811Re-query CCDS DB by Protein ID:ENSMUSP00000101437
Original member Current member EBI ENSMUST00000146415.1 ENSMUSP00000117219.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146415.1Link to Ensembl Protein Viewer:ENSMUSP00000117219.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146415Re-query CCDS DB by Protein ID:ENSMUSP00000117219
Original member Current member NCBI NM_001285928.1 NP_001272857.1 Accepted alive Link to Nucleotide Sequence:NM_001285928.1Link to Protein Sequence:NP_001272857.1Re-query CCDS DB by Nucleotide ID:NM_001285928Re-query CCDS DB by Protein ID:NP_001272857Link to BLAST:NP_001272857.1
Original member Current member NCBI NM_001285929.1 NP_001272858.1 Accepted alive Link to Nucleotide Sequence:NM_001285929.1Link to Protein Sequence:NP_001272858.1Re-query CCDS DB by Nucleotide ID:NM_001285929Re-query CCDS DB by Protein ID:NP_001272858Link to BLAST:NP_001272858.1
Original member Current member NCBI NM_001285930.1 NP_001272859.1 Accepted alive Link to Nucleotide Sequence:NM_001285930.1Link to Protein Sequence:NP_001272859.1Re-query CCDS DB by Nucleotide ID:NM_001285930Re-query CCDS DB by Protein ID:NP_001272859Link to BLAST:NP_001272859.1
Original member Current member NCBI NM_178671.5 NP_848786.1 Accepted alive Link to Nucleotide Sequence:NM_178671.5Link to Protein Sequence:NP_848786.1Re-query CCDS DB by Nucleotide ID:NM_178671Re-query CCDS DB by Protein ID:NP_848786Link to BLAST:NP_848786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272857.1 277 Q8BG34 277 100% 0 0
NP_001272858.1 277 Q8BG34 277 100% 0 0
NP_001272859.1 277 Q8BG34 277 100% 0 0
NP_848786.1 277 Q8BG34 277 100% 0 0

Chromosomal Locations for CCDS 18830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138720530 138721363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGCCATAGAAGCCCCTGTGAACTTTGCACCACCTGAACGCAGCACTGTGGTCAGCACCGCAGGCGACA
GCTCCACCTGGCAGCCCAGCTCACTCAGGATGCACGTTATCAGGCCCAAGTCTGCCAAGGGCCGGAAGCG
GCCGAATTTGCACAGACCACAAGGCATGGGGGACGGCTCCCCCAGTGCACTATCCTCTTCACCTCCACCA
CGGTCCTCCGGGTCTCCCAGCAACCAGAAACCAGGAGTCTGTGCAACGGTCTCAACATCTCAGGGAGCTC
CTGACGAGATGCCGGAGTTGCTGCTGCAGCAGGCACCGACACGGACCGCCTCATCTCTCAACAGGTACCC
GGTCCTCCCATCCATCAACAGGAGGAGCTTAGAGGTGGGAGCCGTGGACACTGTGGCCAGCAAGACCAGT
TCCCTGCAGCTGAGCAGCGTCCAGGCCCTTTACCAAGAGGATTCAAGCCAGGAAGACTCCAGAACGCAGG
TCTGTGCCTTAGAGAAGAAGTTCATCATCCGAACCAAAAGACAGAGCTCCTCCAGGGCCTCCAACATCGA
GGAGCCGTCGGACGAAGAGCCAAGGCTGCTGCTGGCTGTCCGGTCACCCTCAGGCCAAAGGTTCGTGCGC
TATTTCAGGCCCAGTGACGACCTCCAGACCGTCCTCGAGGTGGCCGAGCAGAAAAACAAAGCCACCTACC
AACACTGCAGCATTGAGACGATGGAAGTGCCCAGGAGACGGTTCTCCGACCTCACCAAGTCCCTCCAGGA
ATGCGGCATCCTTCATAAATCCGTGTTGGGCATCTCGCAGGAGGAGGGGGAGGCGTGGCCCTGA

Translation (277 aa):
MAIEAPVNFAPPERSTVVSTAGDSSTWQPSSLRMHVIRPKSAKGRKRPNLHRPQGMGDGSPSALSSSPPP
RSSGSPSNQKPGVCATVSTSQGAPDEMPELLLQQAPTRTASSLNRYPVLPSINRRSLEVGAVDTVASKTS
SLQLSSVQALYQEDSSQEDSRTQVCALEKKFIIRTKRQSSSRASNIEEPSDEEPRLLLAVRSPSGQRFVR
YFRPSDDLQTVLEVAEQKNKATYQHCSIETMEVPRRRFSDLTKSLQECGILHKSVLGISQEEGEAWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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