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Report for CCDS16494.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16494.2 Public Mus musculus 2 Ccdc73 23 108 98 CCDS HistoryNCBI Gene:211936Re-query CCDS DB by CCDS ID:16494.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16494.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111114.7 ENSMUSP00000106743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111114.7Link to Ensembl Protein Viewer:ENSMUSP00000106743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111114Re-query CCDS DB by Protein ID:ENSMUSP00000106743
Original member Current member NCBI NM_177600.4 NP_808268.2 Accepted alive Link to Nucleotide Sequence:NM_177600.4Link to Protein Sequence:NP_808268.2Re-query CCDS DB by Nucleotide ID:NM_177600Re-query CCDS DB by Protein ID:NP_808268Link to BLAST:NP_808268.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808268.2 1066 Q8CDM4 1066 100% 0 0

Chromosomal Locations for CCDS 16494.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104907561 104907698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104914658 104914729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104926904 104926975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104929523 104929558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104930975 104931049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104945417 104945455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104951507 104951642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104951869 104951948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104973167 104973295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104973858 104973917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104975556 104975660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104980990 104981100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104984974 104985108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104989868 104990051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104991080 104992552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104994469 104994602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104998963 104999184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3201 nt):
ATGGAGGACAGTTTCAACACCACATCATCAGCATCTACCTTCACTCTTCAGAGTTCTTCAGAGACAATGG
TTTCTATTCAGCTCCTCGATTTCAGAACAAGTTTACTTGAAGCACTAGAAGAGCTGCGTATGAGAAGGAA
AGCAGAGACTCAATATGAAGAGCAGATTGCTAAAATTATTCTGGAGACACAAGAACTGAAATGGCAAAAG
GAGGCTCTTCAGAATCAAAAGGAAGCATTAATAAAGCAACACAAAGAAGCAATGGGAGTTTTAAAAAATC
AGCTGCAGATGAAGATGTATGCCTTGGAAGAAGAAAAGGGAAAATACAAACTTGCTACAGAAATCAAAGA
AAAAGAAATAGAAGGATTGAAGGAAACATTAAAAACATTGCAGGTTTCTCAATATTCTTTACAGAAGAAA
GTGAGTGAAATGGAACAAAAGGCTCATTTATACCATCTAGCTAAAGAAGATTATCACAAGCAACTTAATG
AAATTGAAAAATACTATGCTGCAATAACAAATCAGTTTGGATTGGTGAGAGAGAATCATGTAAAGTTAGA
ACAAAATGTACAAGAAGCAATACAGTTAAACAAAAGACTCTCTACCTTAAATGAAAAACAAGAATCTGAA
ATTCACAGTTTAAAGAAGGAACTAAAGAAAGCAGCTTCAGAGTTGATTAAGTCCAAGGTCACATGTCAGC
ATAAGATGGAGGAAGAAAGTATAGATCTAATAATTAAAGAACAAAAATATGAAGAACTCCAAGAAAGACT
CAACATGGAATTAGAAGTAAATAAGAAAATTAATGAAGAGATTACTCACATTCAAGAAGAAAAGCAGGAT
ATCATCATTTCTTTTCAACATATGCAGCAATTACTTCAGCAAGAAACTCAAGCTAATACTGAAATCGATG
CAGAATTGAAGGTGCTAAGAGAAAATAATCAGACCCTTGAAAGAGATAATGAGCTGCAAAGGGAGAAGGT
AAAAGAAAATGAAGAAAAGTTCCTTAGTCTTGAGAAGGAGCATGAGAGAGCACTAGGAACTTGGAAGAAA
CATGTTGAAGAGCTTAGTGGAGAAATGAATGTAATTAAAAATGAGTTGTCATCACTTAGGGAAACTCATG
CTAAGTTGCAAGAACATTACAACAAATTATGTGAACAGAAAAAAACTGAGGAATATAAGAAGTTTCAGAA
TGTTCCAGAACTAAATAATGAAAATAGTGATGAACTAACCAGGAAAAAATCAGAAAATATCATCACACAA
AAGTACAATTCTGGTCCAGAAATATGGGGAAAAAATACAAAGAGTTTTTGTTTAGATACTGAATACAGAG
AAGAGGAAAAGAAAGACCTACCTGTAGGAAAAACTGCAGAAGATTTACAGCCTTTTGAAATAAGTGCCAA
AAGCGAAATTAATACTATGGTGTCTCAGGACAGAAACCAAAGTGGAATGTCCCCACACAGAGTCCTTTGC
CTAGATAAAGATGCAACTGATCAAGAACAAACCTCAGATGTTACTGACAGTAGAAAATCAGTCACTGTAG
AAGTAAAAGACAAGCTGTGCTTGGAAAAAGCCAGTGGATGTTCAGAATTTAAATCACTGAATAATTTCTT
TTTAGTGGTAGATGAATCACTAGAAACAGAAATGGTACGTTTAGAAGGAACTGAAGGATTAGGCCTTCTC
CACAGTGGTGGAGATATACCTCTGGACACTCGAAGTAACAAAGCATCCTCTAATGGCATGTCAAATGAGA
TGGCTCACAAAAGAAACTATAACACAGATGGTTCTGAAAGCAACCCATTCAAACAGCAATCCAAATTACT
TCCAGCAGATCTGGAAAATGCTACCGAGAAGGAAATTACAAATCAGGACCAAACCAAAGCAGGTTTAGAT
TCATTTCTAGATATAAAACTAAATCTTGATCCATGTAAGAAACATGGTTTACAGGATTCAAGTCATGTTA
CATTAGATGTTAAGCACCAAAAAATAAAACAAATGGTAAGAGAAGAGAGTCAGTGCAGCACAGAGCCCCG
TTCTTGCTATCAGCTAGCCAGTAAGGCTCCCCAGAAGCCTGGAGGAACCATTGCCTGTGCTGCAGTCGTC
AGCCCACTTGGTCCATCTGCTAGTTCTGATAATAAGTTGACAGCACTTAAGAAATCAGAAAACAGTATTA
ATACTCTGCCAACAGCGGCGAAACCTGCCCCAAGCCCTGCAGAAAGAACTACAAGGACAAATACAAATGA
CATACAGAACAGTTCACTTAGGAACCATCTGGGAGCTTCAGAAAGTAGTGTGAGTGTCTCAGACTTTCAG
GTTAACCAAGGGGACAGTCATACTTCACAAGCCAAAGGTTTGAAAACTGTAGTTCCCCTGACAACTTCCT
CAGAAAAGCAGCCTCCCAGTGAGAGTCAGATAACTGAAACTCCAAAAAGTGGTCTCTCTTCCTTGGTGGA
TGTTACAGGAAGACAGTGCATGTGGCTGAATAACAGAGACAAAACAGAGGCATTAAACGGCATCCTGTCA
GGAGGAACATGCCACGAAGGTCAGCTGGAAGAAGCACATTTGTCTCCTGCAACTCCATCTGCAGACTCAG
TAAGCACAAGTGCAAGGTCAGCCTTTGATCTTCCTAGTCCAGATAAACCTGAGAAAACTCCAGGCTACAT
AAAGTTTGTACCCCTTAGTCCTTGGCCAAAAGTAAATCAAACTAAAACCGTGGGCACCGCAACGCCCAGC
ATCCCTTTATTTCTGAAGGAGAAGACAGTAGATCTGTCAGGAAGCCGAGTGATCACTCCCGTGACTTTTT
GTAAGAATGTTGTTCTGGATGACACTAGAAAAAACATTGAGTCAGATCCTACCAGCAATAGCAGAGCTGC
TGACACCATGAGTAACTGGAGCATCCATCTAGATCCCAAGGGGCAGCCCAGGGAAGAGAGGAATGCAACT
GCACAGACGGTTTATGACTCTTCTTTTCCCACAGAACACGTGAAAGCAGAGCCTTTGATCTCAACTGTGC
AACAAAGCCATTCCCAGACAGTCAAGGTTACAGATTCTCCTGATCCACTCACCTTTTCTCCTGGTAACAA
TGACTGGCAGAGCCTTGTGATGAATAGACTCACTGAAATTGAAAAGTTACTCAGCTTAGAAAGCGACAAC
CAGCCCAAAAGAAGAAAAGTAGAAGAGATGCTGGATAACATAATTGATTAA

Translation (1066 aa):
MEDSFNTTSSASTFTLQSSSETMVSIQLLDFRTSLLEALEELRMRRKAETQYEEQIAKIILETQELKWQK
EALQNQKEALIKQHKEAMGVLKNQLQMKMYALEEEKGKYKLATEIKEKEIEGLKETLKTLQVSQYSLQKK
VSEMEQKAHLYHLAKEDYHKQLNEIEKYYAAITNQFGLVRENHVKLEQNVQEAIQLNKRLSTLNEKQESE
IHSLKKELKKAASELIKSKVTCQHKMEEESIDLIIKEQKYEELQERLNMELEVNKKINEEITHIQEEKQD
IIISFQHMQQLLQQETQANTEIDAELKVLRENNQTLERDNELQREKVKENEEKFLSLEKEHERALGTWKK
HVEELSGEMNVIKNELSSLRETHAKLQEHYNKLCEQKKTEEYKKFQNVPELNNENSDELTRKKSENIITQ
KYNSGPEIWGKNTKSFCLDTEYREEEKKDLPVGKTAEDLQPFEISAKSEINTMVSQDRNQSGMSPHRVLC
LDKDATDQEQTSDVTDSRKSVTVEVKDKLCLEKASGCSEFKSLNNFFLVVDESLETEMVRLEGTEGLGLL
HSGGDIPLDTRSNKASSNGMSNEMAHKRNYNTDGSESNPFKQQSKLLPADLENATEKEITNQDQTKAGLD
SFLDIKLNLDPCKKHGLQDSSHVTLDVKHQKIKQMVREESQCSTEPRSCYQLASKAPQKPGGTIACAAVV
SPLGPSASSDNKLTALKKSENSINTLPTAAKPAPSPAERTTRTNTNDIQNSSLRNHLGASESSVSVSDFQ
VNQGDSHTSQAKGLKTVVPLTTSSEKQPPSESQITETPKSGLSSLVDVTGRQCMWLNNRDKTEALNGILS
GGTCHEGQLEEAHLSPATPSADSVSTSARSAFDLPSPDKPEKTPGYIKFVPLSPWPKVNQTKTVGTATPS
IPLFLKEKTVDLSGSRVITPVTFCKNVVLDDTRKNIESDPTSNSRAADTMSNWSIHLDPKGQPREERNAT
AQTVYDSSFPTEHVKAEPLISTVQQSHSQTVKVTDSPDPLTFSPGNNDWQSLVMNRLTEIEKLLSLESDN
QPKRRKVEEMLDNIID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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