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Report for CCDS27271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27271.1 Public Mus musculus 14 Sucla2 23 108 98 CCDS HistoryNCBI Gene:20916Re-query CCDS DB by CCDS ID:27271.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022706.6 ENSMUSP00000022706.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022706.6Link to Ensembl Protein Viewer:ENSMUSP00000022706.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022706Re-query CCDS DB by Protein ID:ENSMUSP00000022706
Original member Current member EBI ENSMUST00000160507.7 ENSMUSP00000123765.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160507.7Link to Ensembl Protein Viewer:ENSMUSP00000123765.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160507Re-query CCDS DB by Protein ID:ENSMUSP00000123765
Original member Current member NCBI NM_011506.4 NP_035636.1 Accepted alive Link to Nucleotide Sequence:NM_011506.4Link to Protein Sequence:NP_035636.1Re-query CCDS DB by Nucleotide ID:NM_011506Re-query CCDS DB by Protein ID:NP_035636Link to BLAST:NP_035636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035636.1 463 Q9Z2I9 463 100% 0 0

Chromosomal Locations for CCDS 27271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73552808 73552897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73560441 73560621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73568634 73568733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73568862 73569024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73579356 73579484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73581679 73581817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73590757 73590918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73591010 73591152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73592632 73592752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73593677 73593765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73595374 73595448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCGGCGTCCATGTTCTACGGCCGGCAGTTGGCCGCGGCCGCCCTGAGGAGCCACCGGCCGCAGACTA
CGCTGCGAGCCGCCGCCCAGGTTCTGGGAAATTCTGGCTTGTTTAACAAGCATGGACTACAAGTGCAGCA
GCAGCAGCAGAGGACCCTTTCGCTGCATGAATACTTGAGTATGGAGTTATTGCAGGAAGCGGGTGTCTCT
GTTCCCAAAGGCTTCGTGGCAAAGTCATCCGATGAAGCTTACGCAATTGCCAAAAAATTAGGATCAAAGG
ATGTTGTGATAAAGGCACAGGTTTTGGCTGGCGGCAGAGGAAAAGGAACATTTACAAGTGGCCTCAAAGG
AGGAGTGAAGATTGTTTTCTCTCCAGAAGAAGCAAAAGCTGTTTCCTCACAGATGATTGGGCAAAAATTG
ATTACCAAGCAAACTGGAGAAAAGGGCAGAATATGCAATCAAGTTTTGGTCTGTGAGCGCAAATATCCCA
GGAGAGAATACTACTTTGCAATAACAATGGAGAGGTCATTTCAAGGTCCTGTACTGATAGGAAGTGCACA
AGGTGGTGTTAACATTGAAGATGTGGCTGCCGAGAACCCTGAAGCCATTGTAAAGGAGCCTATTGATATA
GTGGAGGGCATCAAAAAGGAACAAGCCGTGACACTTGCACAGAAGATGGGATTTCCTTCTAACATTGTGG
ACTCTGCAGCAGAAAACATGATCAAGCTTTATAATCTTTTTCTGAAGTATGATGCAACTATGGTAGAAAT
AAACCCAATGGTAGAAGATTCTGACGGAAAGGTGTTGTGCATGGATGCAAAGATCAATTTTGATTCAAAT
TCAGCCTACCGCCAGAAGAAGATCTTTGATCTTCAGGACTGGAGTCAGGAAGACGAAAGGGACAAAGAAG
CAGCTAATGCAGATATTAACTACATCGGCCTCGATGGGAGCATAGGATGTCTAGTAAATGGTGCTGGCTT
GGCTATGGCCACAATGGATATAATAAAACTACACGGAGGGACTCCAGCCAACTTTCTTGATGTTGGTGGA
GGCGCCACAGTCCAGCAAGTAACAGAAGCGTTTAAACTCATCACTTCAGATAAAAAGGTGCAGGCTATTC
TGGTCAACATTTTTGGAGGAATCATGAGATGTGATGTTATTGCACAAGGAATAGTCATGGCAGTAAAGGA
TTTAGAAATCAGAATACCTGTTGTGGTGCGGTTACAAGGTACACGAGTTGATGATGCTAAGGCACTAATA
GCAGACAGTGGTCTTAAAATCCTTGCTTGTGATGATTTGGATGAAGCTGCTAAAATGGTTGTAAAGCTCT
CTGAAATAGTGACCTTAGCCAAAGAAGCCCATGTGGATGTGAAGTTTCAATTGCCAATATGA

Translation (463 aa):
MAASMFYGRQLAAAALRSHRPQTTLRAAAQVLGNSGLFNKHGLQVQQQQQRTLSLHEYLSMELLQEAGVS
VPKGFVAKSSDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKL
ITKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDI
VEGIKKEQAVTLAQKMGFPSNIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSN
SAYRQKKIFDLQDWSQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGG
GATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGTRVDDAKALI
ADSGLKILACDDLDEAAKMVVKLSEIVTLAKEAHVDVKFQLPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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