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Report for CCDS39458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39458.1 Public Mus musculus 6 Stra8 23 108 98 CCDS HistoryNCBI Gene:20899Re-query CCDS DB by CCDS ID:39458.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031876.11 ENSMUSP00000031876.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031876.11Link to Ensembl Protein Viewer:ENSMUSP00000031876.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031876Re-query CCDS DB by Protein ID:ENSMUSP00000031876
Original member Current member EBI ENSMUST00000114999.7 ENSMUSP00000110651.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114999.7Link to Ensembl Protein Viewer:ENSMUSP00000110651.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114999Re-query CCDS DB by Protein ID:ENSMUSP00000110651
Original member NCBI NM_009292.2 NP_033318.1 Updated not alive Link to Nucleotide Sequence:NM_009292.2Link to Protein Sequence:NP_033318.1Re-query CCDS DB by Nucleotide ID:NM_009292Re-query CCDS DB by Protein ID:NP_033318
Current member NCBI NM_009292.3 NP_033318.1 Accepted alive Link to Nucleotide Sequence:NM_009292.3Link to Protein Sequence:NP_033318.1Re-query CCDS DB by Nucleotide ID:NM_009292Re-query CCDS DB by Protein ID:NP_033318Link to BLAST:NP_033318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033318.1 393 P70278 393 100% 0 0

Chromosomal Locations for CCDS 39458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34927725 34927916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34930361 34930436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34930883 34930967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34932998 34933285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34934080 34934365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34935583 34935656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34938033 34938144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34939102 34939170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCCACCCCTGGAGAAGGCAACCAACCCAGTGATGATGGGGCACCCCAGCCATTGGCGCAGCTGCAGA
AGCTTGAGCCTCGGGTGGTCCGCAGACGCCTGTCACAGGCCCGCCATCGAGCCACCCTGGTAGGGCTCTT
CAACAACCTAAGGAAGGCAGTTTACTCCCAGTCTGATATCACAGCCTCAAAGTGGCAGGTACTGAATAGG
ACAAAGATTCATATTCAGGAACAGGAAGAAAGCCTGGATAAGTTGCTGAAGCTCAAAGCATCCTTCAACC
TGCAAGATGGGAATCCCAACAGCTTAGAGGAGGTCAAGGAAGAATATGCCAGAATGTATTCCGAGAATGA
CAGTGTATTCCTAAACAGTTTTCTTCAGGACAGTCCCCCTGAGTGGTTCCCCTCTGAGGCTGTTGGACCA
GATGCTGAAGAAGAAGGAGAAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGAAGAAGAAGAGGAAGGAG
ACGAAGAAGGAGAAGAAGAAGAAGAAAACGGTGAAGAGAGAGAGGTAGAGGAGTACCAGGAAGAGGAAGA
AGAAGAAGAGGAGGAGGAGAAAAAAGTCGATCTCTCCCACTCCTCCTCCACTCTGTTGCCGGACCTCATG
GAATTTGAACGGTATCTCAACTTTTACAAGCAGACCATGGACCTCCTGACCATGAACAGCATCATCTCTG
CACATGAAGTGACACTTCCTATTGTCTCTGCCGCCATCTCCCACCTGTGGCAGACTCTCTCTGAGGAGAA
AAAGGCCAGACTCCTGCAGGTGTGGGAACAGCAGCACAGCGCCTTCGCAGACCTCACCGAGGCCTGTCTA
GAGCTGGCCGGGGTGGAGGGCAGCATGAAGGACAGCGGCGTGGACAGCCAGGGAGCGAGCTGCTCGCTGG
AGTCCACCCCAGAAGAGATCCTTTTTGAAGATGCTTTTGACGTGGCAAGTTTCCTGGACAAGAGTGAGGC
CCAGCATATGTCTAACATCAGCGCTATGTTTGCCACCTGCAACTCAGAAAATCCAGAGGAGAAATTTCAG
CTCTACATACAGATCATTGAGTTTTTCAAAAGCCTTGGCTGTGTTAACACTCCATTAAACCAGGAACCAG
AGCCCCCAGATGATGATGATGCAATGTTGCTGAAGTGCCTGGAGACCTTTGACGATCTGTAA

Translation (393 aa):
MATPGEGNQPSDDGAPQPLAQLQKLEPRVVRRRLSQARHRATLVGLFNNLRKAVYSQSDITASKWQVLNR
TKIHIQEQEESLDKLLKLKASFNLQDGNPNSLEEVKEEYARMYSENDSVFLNSFLQDSPPEWFPSEAVGP
DAEEEGEEEGEEEGEEGEEEEEGDEEGEEEEENGEEREVEEYQEEEEEEEEEEKKVDLSHSSSTLLPDLM
EFERYLNFYKQTMDLLTMNSIISAHEVTLPIVSAAISHLWQTLSEEKKARLLQVWEQQHSAFADLTEACL
ELAGVEGSMKDSGVDSQGASCSLESTPEEILFEDAFDVASFLDKSEAQHMSNISAMFATCNSENPEEKFQ
LYIQIIEFFKSLGCVNTPLNQEPEPPDDDDAMLLKCLETFDDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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