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Report for CCDS36400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36400.1 Public Mus musculus 12 Fam228b 23 108 98 CCDS HistoryNCBI Gene:207921Re-query CCDS DB by CCDS ID:36400.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053458.6 ENSMUSP00000050881.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053458.6Link to Ensembl Protein Viewer:ENSMUSP00000050881.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053458Re-query CCDS DB by Protein ID:ENSMUSP00000050881
Original member NCBI NM_175431.4 NP_780640.2 Updated not alive Link to Nucleotide Sequence:NM_175431.4Link to Protein Sequence:NP_780640.2Re-query CCDS DB by Nucleotide ID:NM_175431Re-query CCDS DB by Protein ID:NP_780640
Current member NCBI NM_175431.5 NP_780640.2 Accepted alive Link to Nucleotide Sequence:NM_175431.5Link to Protein Sequence:NP_780640.2Re-query CCDS DB by Nucleotide ID:NM_175431Re-query CCDS DB by Protein ID:NP_780640Link to BLAST:NP_780640.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780640.2 232 Q497Q6-1 232 100% 0 0

Chromosomal Locations for CCDS 36400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4748017 4748177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4748264 4748351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4762327 4762407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4763000 4763191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4764079 4764147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4768390 4768497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGACCACAATGAAAAATAGGAGCCAAGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCA
AAGAATGGTTGGAACCACAGTCGCTTTCTTTTATGGAGGCTTTAGCTAAAGAAGATACTGATGCAGCTGT
TCAATCAATTTTATATAGAGAAAATTATATTATGAAGGAACTAGATAAGTATTTACATCATCAAGACTTC
TTAAACACAAGAAGAAAAGAGATGCTGTATAAAAAGTGGGTTGAACGTGTGGCAGATCCTCTCCAGAAGA
AAATTATAGAAAAAGTTCATTCACATAAGAACATTAAAAAGAGGAGACGTCAAGAATTAGACAATTTTTT
GAAACATTCAAATAAGAAGGGAAATGCATTTATAGAGCATTATGATCCAAAAGAATATGATCCTTTTTAT
ATGAGCAAAGAGGACCCCAATTTTCTGAAGGTTATCATGCCACCGTTTCGTGACCCCTTGAAAAAAGCCC
AATATGACCAGGATGATGAAAAAAGAACCCTTCTGCAGTGTGAGACTGGCAAAATCTATACAATGAAAGA
ATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAGTATTTCTAATTCAAGGCAAAGTATG
ACTCCAAATGGATGGCTTAAAGTGCCCATGAGTTATATAGAAAGTGAATTTTGTAAAAAGAGCAGGTAA

Translation (232 aa):
MTTMKNRSQDDMVTGTLPKLKSSKEWLEPQSLSFMEALAKEDTDAAVQSILYRENYIMKELDKYLHHQDF
LNTRRKEMLYKKWVERVADPLQKKIIEKVHSHKNIKKRRRQELDNFLKHSNKKGNAFIEHYDPKEYDPFY
MSKEDPNFLKVIMPPFRDPLKKAQYDQDDEKRTLLQCETGKIYTMKEFKEIEKAQLHSRFPSISNSRQSM
TPNGWLKVPMSYIESEFCKKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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