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Report for CCDS26076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26076.1 Public Mus musculus 12 Sptlc2 23 108 98 CCDS HistoryNCBI Gene:20773Re-query CCDS DB by CCDS ID:26076.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26076.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021424.4 ENSMUSP00000021424.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021424.4Link to Ensembl Protein Viewer:ENSMUSP00000021424.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021424Re-query CCDS DB by Protein ID:ENSMUSP00000021424
Original member Current member NCBI NM_011479.4 NP_035609.1 Accepted alive Link to Nucleotide Sequence:NM_011479.4Link to Protein Sequence:NP_035609.1Re-query CCDS DB by Nucleotide ID:NM_011479Re-query CCDS DB by Protein ID:NP_035609Link to BLAST:NP_035609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035609.1 560 P97363 560 100% 0 0

Chromosomal Locations for CCDS 26076.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87309901 87310020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87312698 87312827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87314051 87314186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87336032 87336158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87341537 87341756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87342644 87342749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87346708 87346801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87350261 87350385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87355526 87355674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87356548 87356702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87368931 87369125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87388046 87388171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGCGGCCGGAGCCCGGAGGCTGCTGCTGCCGCCGCCCGATGCGGGCGAACGGCTGCGTCAAGAACGGGG
AAGTGAGGAACGGGTACTTGAGGAGCAGCACCGCCACCGTCGCGGCTGCCGGCCAGATTCATCATGTAAC
AGAAAATGGAGGACTGTACAAAAGACCGTTTAATGAAGCTTTTGAAGAAACACCCATGCTGGTTGCTGTG
CTCACATATGTGGGCTATGGCGTACTCACCCTCTTTGGATATCTTCGAGATTTCTTGAGGCATTGGAGAA
TTGAAAAGTGCCACCATGCAACAGAAAGAGAAGAACAAAAGGACTTTGTGTCCTTGTATCAGGATTTTGA
AAACTTCTATACAAGGAACCTCTACATGAGAATCAGAGACAACTGGAATCGACCTATCTGTAGTGTGCCT
GGAGCCAAGGTGGATATCATGGAGAGAAAATCTCATGACTATAACTGGTCATTCAAGTACACAGGGAATA
TAATTAAAGGTGTAATAAACATGGGTTCCTACAACTATCTTGGATTTGCGAGGAACACTGGATCATGTCA
GGAAGCAGCTGCTGAAGTCCTCAAGGAGTATGGAGCAGGGGTGTGCAGCACTCGTCAGGAAATTGGAAAC
CTGGACAAGCATGAAGAACTAGAGAAATTGGTAGCAAGGTTCTTAGGTGTGGAAGCTGCTATGACCTATG
GCATGGGATTTGCAACAAATTCAATGAACATTCCTGCTCTTGTTGGCAAAGGTTGCCTGATTCTGAGTGA
TGAGCTGAACCATGCGTCACTGGTTCTAGGAGCCAGACTGTCAGGAGCAACCATTCGAATCTTCAAACAC
AACAATATGCAAAGCTTAGAGAAGCTTTTAAAAGATGCCATTGTTTATGGTCAGCCTCGGACAAGAAGAC
CCTGGAAGAAAATCTTAATCCTTGTGGAAGGCATATATAGTATGGAGGGGTCTATTGTTCGCCTTCCTGA
AGTGATTGCTCTCAAGAAGAAATACAAGGCATACTTGTATCTGGATGAGGCTCACAGCATTGGGGCTCTT
GGCCCTTCAGGGCGAGGCGTGGTAGATTACTTTGGCCTGGATCCTGAGGATGTAGATGTTATGATGGGAA
CATTCACAAAGAGCTTCGGTGCTTCAGGAGGATACATCGGAGGCAAGAAGGAGCTGATAGACTACCTGCG
CACACATTCTCACAGTGCTGTGTATGCCACGTCGATGTCACCGCCTGTGATGGAACAGATTATCACCTCC
ATGAAGTGCATCATGGGGCAGGATGGCACCAGTCTTGGCAAAGAATGTATACAGCAGTTGGCTGAGAACA
CCAGGTATTTCAGGAGACGCCTGAAGGAAATGGGGTTCATCATCTATGGCAATGAAGACTCCCCGGTGGT
GCCTTTGATGCTCTACATGCCGGCCAAAATTGGCGCCTTTGGAAGAGAGATGCTGAAGCGGAACATTGGT
GTAGTTGTGGTGGGATTTCCTGCTACCCCGATCATTGAGTCCAGAGCCAGATTTTGCCTGTCAGCAGCTC
ATACCAAAGAAATACTTGACACTGCTTTGAAGGAGATAGATGAAGTTGGGGATCTGCTGCAGCTAAAGTA
CTCTCGCCACCGGCTGGTGCCTCTACTGGACAGGCCCTTTGATGAGACTACCTATGAAGAGACAGAAGAC
TGA

Translation (560 aa):
MRPEPGGCCCRRPMRANGCVKNGEVRNGYLRSSTATVAAAGQIHHVTENGGLYKRPFNEAFEETPMLVAV
LTYVGYGVLTLFGYLRDFLRHWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVP
GAKVDIMERKSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGN
LDKHEELEKLVARFLGVEAAMTYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKH
NNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGAL
GPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSMSPPVMEQIITS
MKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIG
VVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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