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Report for CCDS37337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37337.1 Public Mus musculus 16 Fbxo40 23 108 98 CCDS HistoryNCBI Gene:207215Re-query CCDS DB by CCDS ID:37337.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075869.12 ENSMUSP00000075266.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075869.12Link to Ensembl Protein Viewer:ENSMUSP00000075266.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075869Re-query CCDS DB by Protein ID:ENSMUSP00000075266
Original member Current member EBI ENSMUST00000114806.1 ENSMUSP00000110454.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114806.1Link to Ensembl Protein Viewer:ENSMUSP00000110454.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114806Re-query CCDS DB by Protein ID:ENSMUSP00000110454
Original member Current member NCBI NM_001037321.2 NP_001032398.1 Accepted alive Link to Nucleotide Sequence:NM_001037321.2Link to Protein Sequence:NP_001032398.1Re-query CCDS DB by Nucleotide ID:NM_001037321Re-query CCDS DB by Protein ID:NP_001032398Link to BLAST:NP_001032398.1
Original member Current member NCBI NM_001358217.1 NP_001345146.1 Accepted alive Link to Nucleotide Sequence:NM_001358217.1Link to Protein Sequence:NP_001345146.1Re-query CCDS DB by Nucleotide ID:NM_001358217Re-query CCDS DB by Protein ID:NP_001345146Link to BLAST:NP_001345146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032398.1 710 P62932 710 100% 0 0
NP_001345146.1 710 P62932 710 100% 0 0

Chromosomal Locations for CCDS 37337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36966073 36966285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36968827 36970743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36978749 36978751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGGGTCGGGCACGCAAGCCTCCACCTGCGCTGCACAGGCACTGTGAGGGATGCTTCAACCGCCACTGCC
ACGTTCCGGTGGAGCCCAGCGTCTCCTGCCTGGTGATAAGCTGCCACCTGCTCTGTGGCGCCACCTTCCA
CATGTGCAAAGAGTCAGAGCATACACTCCTCTGCCCTCTGGAGCAGGTTCCCTGCCTCAACTCTGAGTAT
GGCTGCCCGCTCTCCATGGCACGCCACAAGCTGGCTAAGCACCTGCAGGTATGCCCCGCCAGCGTGGTCT
GCTGCTCCATGGAATGGATCCGCTGGCCAAACGTGGACTCAGAAACATTCCTTCACGAGAACATCATGAA
AGAGACCCCCAGTGAGGAGTGTTTGGACACAGCCCTGGCCCTCCAGGACCAGAAGGTACTCTTCAGATCC
TTGAAAATGGTAGAGCTTTTCCCAGAAACCAGAGACGCCACGGAGGAGGAACCAGACATGAATGGTGACA
CCAGTTGGGAGGAGACTGGGGGCGCAGTGGGGGGAGTGGATGCCAGGCTAGCACCAAATTCTTGTTTGCC
GGCAACCAGTAGGCAAATGATGGAGCTCAGTCAGGAGGAACGAGATGCACTGGCAAAAACCAAAGAAGGG
ATGGACCTGGACAAGTTTGGCAAGTGGGAAAGTATGTTCAGCAAGGAGCACGCAGCCTCTGTTTTAACAG
GTTCCTTGGGGAAGAGTGAAGACAAGAATGGGGATGTGGCTGGGAAAGAGCAGTGCTCCAGTAATGTTCG
CATAGGGGATGCAGAGGGTTCTGCCGAAAGGAGAGGACCACAGGAAAGCCAGAAGTCCCAGGAACTTCCC
GCTACCATGGAGATGACAGGGCTTGCTCCCTGGCAAGATGGTGTTCTGGAAAGACTAAAAACAGCCGTGG
ATGCCAAAGACTATAACATGTATCTGGTGCACAACGGGCGGATGCTCATCCACTTTGGGCAGATGCCTGC
TTGTACGCCCAAGGAGAGGGACTTTGTTTATGGCAACCTAGAGGCTCAAGAAGTGAAAACGGTTTATACC
TTCAAGATTCCCGTGAGCTACTGCGGGAAGCGAGCTCGCTTGGGAGATGCCATGTTGAAATGCAGACCAA
GTGAACACAAGGCTGTGGACACTTCTGATCTGGGCATCTCTGTGGAGGACCTGCCCAAATCTGATCTCAT
CAAGACCACCCTCCAGTGTGCTTTGGAAAGAGAACTCAAAGGCCATGTCATCTCTGAATCCAGGAGCATC
GATGGACTCTTTATGGACCTTGCCACCCAAACATACAACTTTGAGCCAGAACAGTTTTCCTCAGAGACAG
TGTTGGCTGATCTCCTAGGCACTGCCCAACCCGGGGGCCTGCACGTGGAGCTCCACAGCGAGTGTGTGAC
TAGAAGACACAACAAAAGCAGCTCAGCTTTTACGTTCACCTGCAACAAATTCTTCCGAAGGGATGAATTT
CCCCTGCACTTCAAGAATGTCCACACTGACATCCAGTCGAGTCTCGATGGCTGGTTCCAGCATCGATGCC
CCCTAGCCTACTTGGGATGTACATTTGTTCAGAACCACTTCCGCCCCCCTGGACAAAAAGCAAAAGTGAT
CTATAGCCAGGAGCTGAAGACCTTTGCCATCAAACCAGAGGTTGCTCCGGAGCTGAGTGAGAAATGGAAG
AGCGACCATCTCTCTGGCCGTGATGGGAAAAGCCTGAATTCTCTAACCAGCCTGCCCCTGGAGGTGTTGC
AATACATTGCTGGGTTTCTGGACAGCATCAGCCTGTCCCAGCTGTCCCAGGTGTCAGTACTGATGAGGAA
CATCTGTGCCACTTTGTTGCAAGAGAGAGGGATGGTCCTCTCGCAATGGAAGAAGAAGAGGTATTCTCAC
GGAGGCACCTCCTGGAAAGTCCACAATCAGATCTGGCAGTTCAGCAGCCTCTTCTCAAAAATCAACAGCT
GGGAGTTTAATGACGTCACCTCCATGTCTGAGCACCTGAAAACCTGTCCTTTCAACATCGTGGAGCGGAA
GACTGACCCGATTCGTTTGACCAGCATGTGCCAGCCCCAAGAGAAGGCCCGGGAGAGCTTAGTGTCCACC
TTTAGGGCCCGACCACGGGGCAGACACTTTTGA

Translation (710 aa):
MGRARKPPPALHRHCEGCFNRHCHVPVEPSVSCLVISCHLLCGATFHMCKESEHTLLCPLEQVPCLNSEY
GCPLSMARHKLAKHLQVCPASVVCCSMEWIRWPNVDSETFLHENIMKETPSEECLDTALALQDQKVLFRS
LKMVELFPETRDATEEEPDMNGDTSWEETGGAVGGVDARLAPNSCLPATSRQMMELSQEERDALAKTKEG
MDLDKFGKWESMFSKEHAASVLTGSLGKSEDKNGDVAGKEQCSSNVRIGDAEGSAERRGPQESQKSQELP
ATMEMTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGNLEAQEVKTVYT
FKIPVSYCGKRARLGDAMLKCRPSEHKAVDTSDLGISVEDLPKSDLIKTTLQCALERELKGHVISESRSI
DGLFMDLATQTYNFEPEQFSSETVLADLLGTAQPGGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEF
PLHFKNVHTDIQSSLDGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFAIKPEVAPELSEKWK
SDHLSGRDGKSLNSLTSLPLEVLQYIAGFLDSISLSQLSQVSVLMRNICATLLQERGMVLSQWKKKRYSH
GGTSWKVHNQIWQFSSLFSKINSWEFNDVTSMSEHLKTCPFNIVERKTDPIRLTSMCQPQEKARESLVST
FRARPRGRHF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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