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Report for CCDS30153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30153.1 Public Mus musculus X Rbmx 23 108 98 CCDS HistoryNCBI Gene:19655Re-query CCDS DB by CCDS ID:30153.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114726.7 ENSMUSP00000110374.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114726.7Link to Ensembl Protein Viewer:ENSMUSP00000110374.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114726Re-query CCDS DB by Protein ID:ENSMUSP00000110374
Original member Current member EBI ENSMUST00000114730.7 ENSMUSP00000110378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114730.7Link to Ensembl Protein Viewer:ENSMUSP00000110378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114730Re-query CCDS DB by Protein ID:ENSMUSP00000110378
Original member NCBI NM_001166623.1 NP_001160095.1 Updated not alive Link to Nucleotide Sequence:NM_001166623.1Link to Protein Sequence:NP_001160095.1Re-query CCDS DB by Nucleotide ID:NM_001166623Re-query CCDS DB by Protein ID:NP_001160095
Current member NCBI NM_001166623.2 NP_001160095.1 Accepted alive Link to Nucleotide Sequence:NM_001166623.2Link to Protein Sequence:NP_001160095.1Re-query CCDS DB by Nucleotide ID:NM_001166623Re-query CCDS DB by Protein ID:NP_001160095Link to BLAST:NP_001160095.1
Original member NCBI NM_011252.4 NP_035382.1 Updated not alive Link to Nucleotide Sequence:NM_011252.4Link to Protein Sequence:NP_035382.1Re-query CCDS DB by Nucleotide ID:NM_011252Re-query CCDS DB by Protein ID:NP_035382
Current member NCBI NM_011252.5 NP_035382.1 Accepted alive Link to Nucleotide Sequence:NM_011252.5Link to Protein Sequence:NP_035382.1Re-query CCDS DB by Nucleotide ID:NM_011252Re-query CCDS DB by Protein ID:NP_035382Link to BLAST:NP_035382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160095.1 391 Q9WV02-1 391 100% 0 0
NP_035382.1 391 Q9WV02-1 391 100% 0 0

Chromosomal Locations for CCDS 30153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 57387083 57387393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57388061 57388143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57388522 57388647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57388745 57388859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57389419 57389571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57390064 57390235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57391272 57391378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 57391567 57391675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCC
TTGAGGCAGTGTTTGGCAAATATGGACGAATAGTGGAAGTTCTTTTGATGAAGGACCGAGAAACGAATAA
GTCAAGAGGATTCGCTTTTGTCACTTTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAAT
GGAAAGTCCTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCACCAAACCATCATTTGAAAGTGGTAGAC
GTGGACTACCCCCACCTCCAAGAAGCAGAGGCCCTCCCAGAGGTCTTCGAGGAGGAAGAGGAGGAAGTGG
AGGAACCAGAGGACCCCCCTCCCGGGGAGGACACATGGATGATGGTGGCTACTCCATGAATTTTACCATG
AGTTCTTCCAGAGGACCTCTGCCAGTAAAACGAGGACCACCACCACGAAGTGGAGGTCCTCCTCCTAAAA
GATCAGCACCTTCTGGACCAGTTCGTAGCAGCAGTGGACTGGGAGGAAGAGCCCCTGTGTCCCGTGGAAG
AGATGGTTACGGAGGCCCGCCACGAAGGGAGCCCCTGCCTTCTCGAAGAGATGTTTATTTGTCCCCGAGA
GATGATGGATATTCCACTAAAGACAGCTATTCAAGCAGAGAATATCCAAGTTCTCGAGATACACGAGATT
ATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCACGAGATGACTATCCATC
AAGAGGCTATAGTGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCAAGTGGAGGTTCC
TACAGAGATTCGTATGAGAGTTATGGTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTT
ATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTA
CTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTTCCC
CCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAG
GTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAG

Translation (391 aa):
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN
GKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFTM
SSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGLGGRAPVSRGRDGYGGPPRREPLPSRRDVYLSPR
DDGYSTKDSYSSREYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGS
YRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLP
PSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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