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Report for CCDS89826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89826.1 Public Mus musculus 4 Airim 23 108 98 CCDS HistoryNCBI Gene:194268Re-query CCDS DB by CCDS ID:89826.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094769.12 ENSMUSP00000154851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094769.12Link to Ensembl Protein Viewer:ENSMUSP00000154851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094769Re-query CCDS DB by Protein ID:ENSMUSP00000154851
Original member Current member NCBI NM_001355603.1 NP_001342532.1 Accepted alive Link to Nucleotide Sequence:NM_001355603.1Link to Protein Sequence:NP_001342532.1Re-query CCDS DB by Nucleotide ID:NM_001355603Re-query CCDS DB by Protein ID:NP_001342532Link to BLAST:NP_001342532.1
Original member Current member NCBI NM_001355605.1 NP_001342534.1 Accepted alive Link to Nucleotide Sequence:NM_001355605.1Link to Protein Sequence:NP_001342534.1Re-query CCDS DB by Nucleotide ID:NM_001355605Re-query CCDS DB by Protein ID:NP_001342534Link to BLAST:NP_001342534.1
Original member Current member NCBI NM_177573.3 NP_808241.2 Accepted alive Link to Nucleotide Sequence:NM_177573.3Link to Protein Sequence:NP_808241.2Re-query CCDS DB by Nucleotide ID:NM_177573Re-query CCDS DB by Protein ID:NP_808241Link to BLAST:NP_808241.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342532.1 217 Q499E6-1 217 100% 0 0
NP_001342534.1 217 Q499E6-1 217 100% 0 0
NP_808241.2 217 Q499E6-1 217 100% 0 0

Chromosomal Locations for CCDS 89826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124938443 124938717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124940366 124940545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124942353 124942471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124942583 124942662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCTCATGACCAGCCTCTGCTGGTTGTGCAGGAGGCCCTGAGGAAGTGCTTCCCTGTGGTGGAGGAAC
AGCAGAACCTGTGGCAGAGCACCCTGCAGGACTGCTCGCCCCTCCTGTCCTCTCTCAGTAACCTGGCTGA
GCAGCTGCAAGCCGCACAGAGTCTGCGCTTTGAGGATGTGCCAGCCCTGCGTCCCTTTCCAGACTTACAG
GAGCGGTTGAGGCGCAAGCAGCTGGAGGCTGGTGACGTTGTTCTGGACAAGCTAGCTGAGCGGCTAGCCA
CCCTCCTCAAGGTCCGTAACACCATCAACAGCCACGTGGAGCAGGTGTTTCAGGCCTACGAGCAGCATGC
GGCTGTGCTAGACATTGACACCGTCCTGCGCCCCTCAGTTGTGAGCCCCTCTGTGGCTGACATGTTGGAG
TGGCTGCAGGACATCGACAGACATTATGGAAGCTCGTACCTGAAGAGAAAGTACCTCCTCTCCTCCATCC
ACTGGGGAGACTTGGCCAGCATCCAAGCACTGCCCAAGGCCTGGGACCAGATTTCAGAAAATGAGTGCCA
AACTCTTGTGTCAGATGTCCTGGTGAGTGTCTCCTTCTTCCTGGAGGAGCCAGGAGGCTGTGCAGCGTCT
GGAGATCTGGAGCACCACAGCTGA

Translation (217 aa):
MAHDQPLLVVQEALRKCFPVVEEQQNLWQSTLQDCSPLLSSLSNLAEQLQAAQSLRFEDVPALRPFPDLQ
ERLRRKQLEAGDVVLDKLAERLATLLKVRNTINSHVEQVFQAYEQHAAVLDIDTVLRPSVVSPSVADMLE
WLQDIDRHYGSSYLKRKYLLSSIHWGDLASIQALPKAWDQISENECQTLVSDVLVSVSFFLEEPGGCAAS
GDLEHHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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