NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27955.1 Public Mus musculus 16 Prm2 23 108 98 CCDS HistoryNCBI Gene:19119Re-query CCDS DB by CCDS ID:27955.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037996.6 ENSMUSP00000047925.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037996.6Link to Ensembl Protein Viewer:ENSMUSP00000047925.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037996Re-query CCDS DB by Protein ID:ENSMUSP00000047925
Original member Current member EBI ENSMUST00000189593.1 ENSMUSP00000139898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189593.1Link to Ensembl Protein Viewer:ENSMUSP00000139898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189593Re-query CCDS DB by Protein ID:ENSMUSP00000139898
Original member Current member NCBI NM_008933.2 NP_032959.1 Accepted alive Link to Nucleotide Sequence:NM_008933.2Link to Protein Sequence:NP_032959.1Re-query CCDS DB by Nucleotide ID:NM_008933Re-query CCDS DB by Protein ID:NP_032959Link to BLAST:NP_032959.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032959.1 107 P07978 107 100% 0 0

Chromosomal Locations for CCDS 27955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10791570 10791634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10791740 10791998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGGTTCGCTACCGAATGAGGAGCCCCAGTGAGGGTCCGCACCAGGGGCCTGGACAAGACCATGAACGCG
AGGAGCAGGGGCAGGGGCAAGGGCTGAGCCCAGAGCGCGTAGAGGACTATGGGAGGACACACAGGGGCCA
CCACCACCACAGACACAGGCGCTGCTCTCGTAAGAGGCTACATAGGATCCACAAGAGGCGTCGGTCATGC
AGAAGGCGGAGGAGACACTCCTGCCGCCACAGGAGGCGGCATCGCAGAGGCTGCAGAAGATCCCGAAGGA
GGAGGAGATGCAGGTGCAGGAAATGTAGGAGGCACCATCACTAA

Translation (107 aa):
MVRYRMRSPSEGPHQGPGQDHEREEQGQGQGLSPERVEDYGRTHRGHHHHRHRRCSRKRLHRIHKRRRSC
RRRRRHSCRHRRRHRRGCRRSRRRRRCRCRKCRRHHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH