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Report for CCDS18834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18834.1 Public Mus musculus 4 Pla2g5 23 108 98 CCDS HistoryNCBI Gene:18784Re-query CCDS DB by CCDS ID:18834.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030524.13 ENSMUSP00000030524.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030524.13Link to Ensembl Protein Viewer:ENSMUSP00000030524.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030524Re-query CCDS DB by Protein ID:ENSMUSP00000030524
Original member Current member EBI ENSMUST00000102511.1 ENSMUSP00000099569.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102511.1Link to Ensembl Protein Viewer:ENSMUSP00000099569.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102511Re-query CCDS DB by Protein ID:ENSMUSP00000099569
Original member Current member EBI ENSMUST00000102512.10 ENSMUSP00000099570.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102512.10Link to Ensembl Protein Viewer:ENSMUSP00000099570.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102512Re-query CCDS DB by Protein ID:ENSMUSP00000099570
Original member Current member EBI ENSMUST00000102513.7 ENSMUSP00000099571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102513.7Link to Ensembl Protein Viewer:ENSMUSP00000099571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102513Re-query CCDS DB by Protein ID:ENSMUSP00000099571
Original member NCBI NM_001122954.1 NP_001116426.1 Updated not alive Link to Nucleotide Sequence:NM_001122954.1Link to Protein Sequence:NP_001116426.1Re-query CCDS DB by Nucleotide ID:NM_001122954Re-query CCDS DB by Protein ID:NP_001116426
Current member NCBI NM_001122954.2 NP_001116426.1 Accepted alive Link to Nucleotide Sequence:NM_001122954.2Link to Protein Sequence:NP_001116426.1Re-query CCDS DB by Nucleotide ID:NM_001122954Re-query CCDS DB by Protein ID:NP_001116426Link to BLAST:NP_001116426.1
Original member NCBI NM_011110.4 NP_035240.3 Updated not alive Link to Nucleotide Sequence:NM_011110.4Link to Protein Sequence:NP_035240.3Re-query CCDS DB by Nucleotide ID:NM_011110Re-query CCDS DB by Protein ID:NP_035240
Current member NCBI NM_011110.5 NP_035240.3 Accepted alive Link to Nucleotide Sequence:NM_011110.5Link to Protein Sequence:NP_035240.3Re-query CCDS DB by Nucleotide ID:NM_011110Re-query CCDS DB by Protein ID:NP_035240Link to BLAST:NP_035240.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116426.1 137 P97391 137 99.2701% 0 1
NP_035240.3 137 P97391 137 99.2701% 0 1

Chromosomal Locations for CCDS 18834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 138800540 138800661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138801352 138801458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138804507 138804651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 138806185 138806224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGAAGGGTCTCCTCACACTGGCTTGGTTCCTGGCTTGCAGTGTGCCTGCAGTCCCAGGGGGCTTGCTAG
AACTCAAGTCCATGATTGAGAAGGTGACCAGGAAGAATGCCTTTAAGAACTATGGCTTCTACGGCTGCTA
CTGTGGCTGGGGCGGTCGCGGGACACCCAAGGATGGCACTGATTGGTGCTGTCAGATGCACGACCGTTGT
TATGGGCAACTGGAGGAAAAAGACTGTGCCATTCGGACCCAGTCCTATGACTACAGATACACAAATGGCC
TAGTCATCTGCGAACACGACTCCTTCTGTCCAATGAGGCTCTGTGCCTGTGACCGGAAGCTGGTCTACTG
CCTGCGGAGAAACCTCTGGACTTACAACCCTCTTTACCAGTATTACCCCAACTTCCTCTGCTAA

Translation (137 aa):
MKGLLTLAWFLACSVPAVPGGLLELKSMIEKVTRKNAFKNYGFYGCYCGWGGRGTPKDGTDWCCQMHDRC
YGQLEEKDCAIRTQSYDYRYTNGLVICEHDSFCPMRLCACDRKLVYCLRRNLWTYNPLYQYYPNFLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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