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Report for CCDS25270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25270.1 Public Mus musculus 11 Pdk2 23 108 98 CCDS HistoryNCBI Gene:18604Re-query CCDS DB by CCDS ID:25270.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038431.7 ENSMUSP00000041447.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038431.7Link to Ensembl Protein Viewer:ENSMUSP00000041447.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038431Re-query CCDS DB by Protein ID:ENSMUSP00000041447
Original member Current member NCBI NM_133667.2 NP_598428.2 Accepted alive Link to Nucleotide Sequence:NM_133667.2Link to Protein Sequence:NP_598428.2Re-query CCDS DB by Nucleotide ID:NM_133667Re-query CCDS DB by Protein ID:NP_598428Link to BLAST:NP_598428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598428.2 407 Q9JK42 407 100% 0 0

Chromosomal Locations for CCDS 25270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95027182 95027322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95027865 95027978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95028479 95028586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95028698 95028796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95028922 95028998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95029654 95029731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95029917 95030006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95031836 95032020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95032465 95032536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95039349 95039490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95041139 95041256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGCGCTGGGTCCGGGCGCTGTTGAAGAATGCGTCCCTGGCAGGGGCACCCAAGTACATCGAGCACTTCA
GCAAGTTCTCCCCGTCCCCGTTGTCCATGAAGCAGTTTCTAGACTTCGGATCCAGCAATGCCTGCGAGAA
GACGTCATTCACTTTCCTCCGGCAGGAGCTGCCCGTTCGCCTGGCCAACATCATGAAAGAGATCAACCTG
CTTCCTGACCGAGTGCTGGGCACCCCATCGGTGCAGCTGGTGCAGAGCTGGTATGTCCAGAGTCTGCTGG
ACATCATGGAATTCCTGGACAAAGACCCCGAGGACCACCGGACTCTAAGCCAGTTCACAGATGCCCTGGT
CACCATCCGGAACCGGCACAATGACGTGGTGCCCACCATGGCACAGGGAGTGCTGGAGTACAAGGACACC
TATGGAGATGACCCCGTCTCCAACCAGAACATCCAGTACTTCCTGGACCGCTTCTACCTCAGCCGCATCT
CCATCCGAATGCTAATCAATCAACACACCCTCATCTTTGATGGCAGCACCAACCCAGCCCACCCCAAACA
CATTGGCAGCATCGATCCCAACTGCAGCGTGTCTGATGTGGTGAAAGACGCCTATGACATGGCTAAGCTC
CTGTGTGACAAGTATTACATGGCTTCCCCTGACCTGGAGATCCAGGAAGTCAATGCCACCAACGCCAACC
AGCCCATTCACATGGTCTATGTCCCTTCCCACCTGTACCACATGCTCTTTGAACTCTTTAAGAATGCCAT
GCGGGCCACTGTGGAAAGCCACGAGTCCAGCCTCACACTCCCCCCCATCAAGATTATGGTGGCCCTCGGT
GAAGAAGATCTGTCCATCAAAATGAGTGACCGAGGCGGGGGTGTCCCCTTGAGGAAGATCGAGAGGCTCT
TCAGCTACATGTACTCCACAGCTCCCACACCCCAGCCTGGCACTGGGGGTACCCCGCTGGCTGGCTTTGG
GTACGGACTCCCCATTTCCCGCCTCTACGCCAAGTACTTCCAGGGGGACTTGCAGCTTTTCTCTATGGAG
GGCTTTGGGACAGATGCTGTCATCTATCTGAAGGCCCTGTCCACGGACTCAGTGGAGCGCCTGCCTGTCT
ACAACAAGTCTGCCTGGCGCCACTACCAGACCATCCAGGAGGCCGGCGACTGGTGTGTGCCCAGCACAGA
GCCCAAGAACACATCGACGTATCGGGTCAGCTAG

Translation (407 aa):
MRWVRALLKNASLAGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINL
LPDRVLGTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDT
YGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKHIGSIDPNCSVSDVVKDAYDMAKL
LCDKYYMASPDLEIQEVNATNANQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALG
EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSME
GFGTDAVIYLKALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKNTSTYRVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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