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Report for CCDS25818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25818.1 Public Mus musculus 12 Mycn 23 108 98 CCDS HistoryNCBI Gene:18109Re-query CCDS DB by CCDS ID:25818.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043396.14 ENSMUSP00000045993.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043396.14Link to Ensembl Protein Viewer:ENSMUSP00000045993.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043396Re-query CCDS DB by Protein ID:ENSMUSP00000045993
Original member Current member EBI ENSMUST00000130990.1 ENSMUSP00000114225.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130990.1Link to Ensembl Protein Viewer:ENSMUSP00000114225.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130990Re-query CCDS DB by Protein ID:ENSMUSP00000114225
Original member Current member NCBI NM_008709.3 NP_032735.3 Accepted alive Link to Nucleotide Sequence:NM_008709.3Link to Protein Sequence:NP_032735.3Re-query CCDS DB by Nucleotide ID:NM_008709Re-query CCDS DB by Protein ID:NP_032735Link to BLAST:NP_032735.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032735.3 462 P03966 462 100% 0 0

Chromosomal Locations for CCDS 25818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 12937006 12937610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12939610 12940393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGCCCAGCTGCACCGCGTCCACCATGCCGGGGATGATCTGCAAGAACCCAGACCTCGAGTTTGACTCAC
TGCAGCCCTGCTTCTACCCGGACGAAGATGACTTCTACTTCGGCGGTCCCGACTCGACCCCACCGGGGGA
GGACATCTGGAAGAAGTTTGAGCTGCTGCCCACGCCCCCGTTGTCGCCCAGCCGCGCCTTCCCAGAGCAC
AGCCCGGAGCCTTCGAATTGGGCTACGGAGATGCTGCTGCCGGAGGCCGACCTGTGGGGCAACCCGGCCG
AGGAGGATGCGTTCGGTCTCGGGGGCCTGGGTGGCCTCACTCCTAATCCGGTCATCCTTCAGGACTGCAT
GTGGAGCGGCTTCTCTGCCCGCGAGAAGCTAGAGCGCGCAGTGAACGAAAAACTACAGCACGGCCACGGG
CCCCCGGGCGTCAGCTCAGCCTGCTCGGCTCCCGGAGTGGGTGCCAGCAGCCCCGGGGGCCGTGCCCTTG
GTGGGTCGTCGAGTGCTAGCCACACCGGGGCCACCCTGCCTACCGACCTCTCCCACCCGGCTGCCGAATG
TGTGGACCCCGCCGTGGTCTTCCCCTTCCCGGTGAACAAGCGAGAGTCGGCGTCGGTGCCCGCTGCCCCC
ACTAGCGCCCCGGCGACCAGCGCTGCGGTCACTAGTGTGTCTGTTCCAGCTACTGCCCCGGTGGCTGCTC
CTGCTCGTGCAGGCGGCCGTCCTGCCAGCAGTGGGGAGGCCAAGGCCCTCAGCACCTCCGGAGAGGATAC
CTTGAGCGACTCAGATGATGAGGATGACGAGGAGGAAGATGAAGAGGAGGAAATCGATGTGGTCACCGTA
GAGAAGAGACGTTCCTCCTCTAACAACAAGGCGGTAACCACTTTCACGATCACTGTGCGTCCCAAGACCT
CCGCTCTGGGCCTGGGGCGAGCACAGCCTGGCGAGCTGATCCTCAAGCGCTGTGTTCCCATCCATCAGCA
GCACAACTATGCTGCACCCTCACCCTACGTGGAGAGCGAGGACGCGCCCCCGCAGAAAAAGATCAAGAGC
GAGGCTTCTCCACGCCCCCTCAAAAGTGTTGTTCCAGCAAAAGCGAAGAGCCTGAGCCCCCGAAACTCAG
ACTCGGAGGACAGCGAGCGCCGCCGCAACCACAACATCCTGGAGCGTCAACGCCGGAACGACCTGCGCTC
CAGCTTCCTGACGCTCAGGGACCATGTGCCTGAGCTGGTGAAGAACGAGAAGGCCGCCAAGGTGGTCATC
TTGAAAAAGGCCACCGAGTACGTGCACGCCCTACAGGCCAACGAGCACCAGCTCCTGCTGGAAAAGGAGA
AACTGCAGGCGAGGCAGCAGCAGTTGCTAAAGAAGATCGAACACGCTCGGACTTGCTAA

Translation (462 aa):
MPSCTASTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRAFPEH
SPEPSNWATEMLLPEADLWGNPAEEDAFGLGGLGGLTPNPVILQDCMWSGFSAREKLERAVNEKLQHGHG
PPGVSSACSAPGVGASSPGGRALGGSSSASHTGATLPTDLSHPAAECVDPAVVFPFPVNKRESASVPAAP
TSAPATSAAVTSVSVPATAPVAAPARAGGRPASSGEAKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTV
EKRRSSSNNKAVTTFTITVRPKTSALGLGRAQPGELILKRCVPIHQQHNYAAPSPYVESEDAPPQKKIKS
EASPRPLKSVVPAKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVI
LKKATEYVHALQANEHQLLLEKEKLQARQQQLLKKIEHARTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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