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Report for CCDS39248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39248.1 Public Mus musculus 5 Mapkapk5 23 108 98 CCDS HistoryNCBI Gene:17165Re-query CCDS DB by CCDS ID:39248.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031410.13 ENSMUSP00000031410.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031410.13Link to Ensembl Protein Viewer:ENSMUSP00000031410.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031410Re-query CCDS DB by Protein ID:ENSMUSP00000031410
Original member Current member NCBI NM_010765.2 NP_034895.1 Accepted alive Link to Nucleotide Sequence:NM_010765.2Link to Protein Sequence:NP_034895.1Re-query CCDS DB by Nucleotide ID:NM_010765Re-query CCDS DB by Protein ID:NP_034895Link to BLAST:NP_034895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034895.1 473 O54992-1 473 100% 0 0

Chromosomal Locations for CCDS 39248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121525145 121525239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121525663 121525767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121526739 121526860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121527091 121527221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121528870 121528990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121531533 121531720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121533309 121533389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121534335 121534430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121535854 121535943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121537112 121537220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121538393 121538490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121539172 121539247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121540502 121540575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121545165 121545200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGTCGGAGGACAGCGACATGGAGAAAGCCATCAAGGAGACCTCCATTTTAGAAGAATATAGTATCAATT
GGACTCAGAAACTGGGAGCCGGAATTAGTGGTCCAGTTAGAGTCTGTGTGAAGAAATCCACTCAAGAACG
GTTTGCACTGAAAATTCTTCTTGATCGTCCAAAAGCTAGAAATGAGGTGCGCCTGCACATGATGTGTGCC
ACACACCCCAACATAGTTCAGATTATTGAAGTGTTTGCTAACAGTGTACAGTTCCCTCATGAGTCCAGCC
CCAGGGCTCGACTCTTAATTGTAATGGAGATGATGGAAGGGGGAGAGCTATTTCACAGAATCAGCCAGCA
CCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAGATAGCCCTGGCTCTACAGCACTGTCAC
TTGCTAAACATTGCGCACAGAGACCTCAAGCCTGAAAATCTGCTTTTCAAGGATAACTCTCTGGACGCCC
CTGTGAAATTATGTGACTTTGGGTTTGCTAAAGTTGACCAAGGTGATTTGATGACACCCCAGTTTACCCC
TTACTATGTAGCACCTCAGGTACTGGAAGCGCAGAGACGGCACCAGAAGGAGAAGTCTGGCATCATACCT
ACCTCGCCAACACCCTACACTTACAACAAGAGCTGTGACTTGTGGTCCCTAGGGGTGATAATTTATGTGA
TGCTGTGCGGATATCCTCCTTTTTACTCCAAACACCATAGTCGGACTATCCCAAAGGATATGCGGAAAAA
GATCATGACAGGAAGTTTCGAGTTCCCAGAAGAAGAGTGGAGCCAGATCTCAGAGATGGCTAAAGATGTT
GTGAGGAAGCTTCTGAAGGTCAAACCAGAGGAAAGACTCACAATCGAGGGAGTGTTGGACCATCCCTGGC
TCAACTCGACAGAGGCCCTGGATAATGTGCTACCCTCTGCCCAGCTGATGATGGATAAGGCGGTGGTTGC
GGGGATCCAGCAGGCGCACGCCGAGCAGCTGGCAAACATGAGGATCCAGGACCTCAAGGTCAGCCTCAAA
CCCCTGCACTCTGTCAACAACCCCATTCTCAGGAAGAGGAAGCTGCTGGGCACCAAGCCAAAGGACGGTA
TTTATATACACGACCATGAGAATGGAACTGAGGACTCAAATGTTGCCTTGGAAAAGCTTCGAGATGTCAT
TGCCCAGTGTATCCTCCCCCAGGCTGGTAAAGGAGAGAATGAAGATGAGAAGCTGAATGAGGTAATGCAG
GAGGCCTGGAAGTACAACCGCGAATGCAAGCTCCTGAGGGATGCTCTGCAGAGTTTTAGCTGGAATGGCC
GTGGATTCACAGATAAAGTTGACCGATTGAAGCTGGCAGAGGTGGTAAAGCAGGTGATCGAAGAGCAGAC
CCTTCCCCACGAGCCCCAGTAG

Translation (473 aa):
MSEDSDMEKAIKETSILEEYSINWTQKLGAGISGPVRVCVKKSTQERFALKILLDRPKARNEVRLHMMCA
THPNIVQIIEVFANSVQFPHESSPRARLLIVMEMMEGGELFHRISQHRHFTEKQASQVTKQIALALQHCH
LLNIAHRDLKPENLLFKDNSLDAPVKLCDFGFAKVDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIP
TSPTPYTYNKSCDLWSLGVIIYVMLCGYPPFYSKHHSRTIPKDMRKKIMTGSFEFPEEEWSQISEMAKDV
VRKLLKVKPEERLTIEGVLDHPWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLK
PLHSVNNPILRKRKLLGTKPKDGIYIHDHENGTEDSNVALEKLRDVIAQCILPQAGKGENEDEKLNEVMQ
EAWKYNRECKLLRDALQSFSWNGRGFTDKVDRLKLAEVVKQVIEEQTLPHEPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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