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Report for CCDS26127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26127.1 Public Mus musculus 12 Prima1 23 108 98 CCDS HistoryNCBI Gene:170952Re-query CCDS DB by CCDS ID:26127.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074416.9 ENSMUSP00000074017.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074416.9Link to Ensembl Protein Viewer:ENSMUSP00000074017.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074416Re-query CCDS DB by Protein ID:ENSMUSP00000074017
Original member Current member NCBI NM_133364.2 NP_579942.2 Accepted alive Link to Nucleotide Sequence:NM_133364.2Link to Protein Sequence:NP_579942.2Re-query CCDS DB by Nucleotide ID:NM_133364Re-query CCDS DB by Protein ID:NP_579942Link to BLAST:NP_579942.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_579942.2 153 Q810F0-1 153 99.3464% 0 1

Chromosomal Locations for CCDS 26127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103197249 103197351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103202649 103202778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103235586 103235721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103241340 103241432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGCTACTCCGGGACCTGGTGCTGCGCCATGGCTGCTGCTGGCCCTCACTTCTGCTGCACTGTGCGCTGC
ACCCACTCTGGGGTTTAGTTCAGGTGACACACGCTGAGCCCCAGAAGTCTTGCTCTAAGGTGACTGACAG
CTGCCAACACATCTGCCAGTGCCGGCCCCCACCCCCTCTTCCCCCTCCACCCCCACCTCCGCCACCTCCC
AGACTACTCTCCGCCCCAGCTCCCAACTCTACCTCCTGCCCTGCAGAGGACAGCTGGTGGTCTGGTCTGG
TGATCATTGTCGCTGTGGTCTGTGCCTCCCTGGTGTTTCTGACTGTCCTGGTCATCATTTGCTACAAAGC
CATAAAGAGGAAACCACTGAGAAAGGATGAGAATGGCACCAGTGTCGCTGAGTACCCCATGAGCTCCTCA
CAGAGCCACAAAGGGGTGGATGTGAACGCTGCAGTGGTGTGA

Translation (153 aa):
MLLRDLVLRHGCCWPSLLLHCALHPLWGLVQVTHAEPQKSCSKVTDSCQHICQCRPPPPLPPPPPPPPPP
RLLSAPAPNSTSCPAEDSWWSGLVIIVAVVCASLVFLTVLVIICYKAIKRKPLRKDENGTSVAEYPMSSS
QSHKGVDVNAAVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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