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Report for CCDS20266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20266.1 Public Mus musculus 6 Loxl3 23 108 98 CCDS HistoryNCBI Gene:16950Re-query CCDS DB by CCDS ID:20266.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000707.8 ENSMUSP00000000707.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000707.8Link to Ensembl Protein Viewer:ENSMUSP00000000707.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000000707Re-query CCDS DB by Protein ID:ENSMUSP00000000707
Original member Current member NCBI NM_013586.5 NP_038614.2 Accepted alive Link to Nucleotide Sequence:NM_013586.5Link to Protein Sequence:NP_038614.2Re-query CCDS DB by Nucleotide ID:NM_013586Re-query CCDS DB by Protein ID:NP_038614Link to BLAST:NP_038614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038614.2 754 Q9Z175 754 100% 0 0

Chromosomal Locations for CCDS 20266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83035482 83035797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83037429 83037592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83038395 83038609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83047988 83048207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83048578 83048758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83048869 83049023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83049184 83049351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83049484 83049646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83049774 83050017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83050116 83050231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83050308 83050444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83050558 83050669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83050800 83050873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGAGAGCTGTCAGTGTGTGGTATTGCTGCCCATGGGGACTACTGCTGCTACACTGTCTGTGCAGCTTCA
GTGTGGGGTCTCCGTCTCCTTCTATCAGCCCAGAGAAGAAGGTAGGAAGCCAGGGGCTGAGGTTCCGGCT
GGCTGGCTTTCCTAGAAAGCCCTATGAAGGTCGAGTGGAGATACAGCGAGCTGGTGAATGGGGCACCATC
TGTGATGATGACTTCACGCTGCAGGCTGCCCATGTCCTCTGCCGGGAGCTGGGCTTCACAGAAGCCACAG
GGTGGACCCATAGTGCCAAATATGGCCCTGGAACAGGCCGAATCTGGTTGGACAATCTGAGCTGCAGGGG
GACTGAAGGAAGTGTGACAGAATGCGCCTCTCGGGGCTGGGGAAACAGTGACTGTACCCATGATGAGGAT
GCCGGGGTCATCTGCAAGGACCAGCGCCTTCCCGGTTTCTCAGACTCCAACGTCATTGAGGTGGAGCATC
AGTTGCAAGTGGAGGAGGTGCGACTCCGACCTGCGGTGGAGTGGGGAAGGAGACCCCTGCCTGTGACTGA
GGGCCTGGTTGAAGTCAGGCTTCCTGAAGGCTGGTCGCAAGTGTGTGACAAAGGCTGGAGTGCCCACAAC
AGCCACGTAGTCTGCGGTATGCTGGGCTTCCCCGGAGAAAAGAGAGTCAACATGGCCTTCTACAGGATGC
TGGCCCAGAAGAAGCAACACTCCTTTGGTCTGCACAGTGTGGCATGTGTGGGCACAGAAGCCCACCTCTC
CCTTTGCTCTCTAGAGTTCTATCGTGCCAATGACACCACCAGGTGCTCTGGGGGAAACCCTGCAGTGGTG
AGCTGTGTGCTGGGCCCTCTTTATGCCACCTTTACTGGTCAGAAGAAGCAGCAACACTCTAAGCCTCAAG
GGGAGGCTCGTGTGCGTCTAAAGGGTGGTGCCCACCAGGGAGAAGGCAGAGTGGAAGTCCTGAAGGCTGG
CACATGGGGAACAGTCTGTGACCGAAAGTGGGACCTGCAGGCAGCCAGTGTGGTGTGTCGAGAACTGGGC
TTTGGCACTGCCCGAGAGGCCCTGAGTGGTGCCCGCATGGGGCAGGGCATGGGTGCCATCCACTTGAGTG
AAGTTCGGTGCTCTGGCCAGGAGCCCTCCCTTTGGAGATGCCCGTCCAAGAACATCACAGCTGAGGACTG
TTCCCACAGCCAGGATGCGGGTGTCCGGTGCAACCTCCCCTACACTGGGGTGGAGACCAAGATCCGACTC
AGTGGGGGCCGCAGCCGGTATGAAGGGCGAGTCGAGGTGCAAATAGGGATACCTGGGCATCTACGCTGGG
GCCTCATCTGTGGGGATGACTGGGGAACCCTGGAGGCCATGGTGGCCTGTAGGCAACTTGGTCTTGGCTA
CGCCAACCACGGCCTGCAGGAGACCTGGTACTGGGACTCAGGGAATGTAACTGAGGTGGTGATGAGCGGA
GTGCGTTGCACGGGGTCTGAGCTGTCCCTGAACCAGTGTGCCCATCACAGCAGCCACATCACCTGCAAGA
AGACGGGAACCCGCTTCACTGCGGGGGTCATCTGTTCTGAAACTGCTTCAGATCTGCTGCTGCACTCGGC
ACTGGTACAGGAAACTGCTTATATTGAAGACCGGCCCTTGCACATGTTGTACTGTGCTGCTGAAGAGAAC
TGCCTGGCTAGCTCTGCCCGCTCGGCCAACTGGCCTTATGGCCACCGGCGTCTGCTCCGATTCTCTTCCC
AGATCCACAACCTAGGAAGAGCTGACTTTAGGCCCAAGGCTGGGCGCCATTCCTGGGTGTGGCATGAGTG
TCATGGGCATTACCACAGTATGGACATCTTCACTCATTATGATATCCTGACCCCCAATGGCACCAAGGTG
GCTGAGGGCCACAAAGCTAGTTTCTGTCTAGAAGACACTGAGTGTCAAGAGGATGTCTCCAAGAGGTATG
AGTGCGCCAACTTTGGAGAGCAGGGCATCACCGTGGGATGTTGGGATCTCTACAGGCATGACATTGACTG
TCAGTGGATCGACATCACAGATGTGAAGCCAGGAAACTACATTCTTCAGGTCGTTATCAACCCAAATTTT
GAGGTAGCAGAAAGTGACTTCACCAACAATGCAATGAAGTGTAACTGCAAATACGACGGGCATCGCATCT
GGGTGCACAACTGCCACATCGGTGATGCCTTCAGCGAAGAAGCCAACAGGAGGTTTGAGCGCTACCCTGG
CCAGACTAGTAACCAGATCGTCTAA

Translation (754 aa):
MRAVSVWYCCPWGLLLLHCLCSFSVGSPSPSISPEKKVGSQGLRFRLAGFPRKPYEGRVEIQRAGEWGTI
CDDDFTLQAAHVLCRELGFTEATGWTHSAKYGPGTGRIWLDNLSCRGTEGSVTECASRGWGNSDCTHDED
AGVICKDQRLPGFSDSNVIEVEHQLQVEEVRLRPAVEWGRRPLPVTEGLVEVRLPEGWSQVCDKGWSAHN
SHVVCGMLGFPGEKRVNMAFYRMLAQKKQHSFGLHSVACVGTEAHLSLCSLEFYRANDTTRCSGGNPAVV
SCVLGPLYATFTGQKKQQHSKPQGEARVRLKGGAHQGEGRVEVLKAGTWGTVCDRKWDLQAASVVCRELG
FGTAREALSGARMGQGMGAIHLSEVRCSGQEPSLWRCPSKNITAEDCSHSQDAGVRCNLPYTGVETKIRL
SGGRSRYEGRVEVQIGIPGHLRWGLICGDDWGTLEAMVACRQLGLGYANHGLQETWYWDSGNVTEVVMSG
VRCTGSELSLNQCAHHSSHITCKKTGTRFTAGVICSETASDLLLHSALVQETAYIEDRPLHMLYCAAEEN
CLASSARSANWPYGHRRLLRFSSQIHNLGRADFRPKAGRHSWVWHECHGHYHSMDIFTHYDILTPNGTKV
AEGHKASFCLEDTECQEDVSKRYECANFGEQGITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVINPNF
EVAESDFTNNAMKCNCKYDGHRIWVHNCHIGDAFSEEANRRFERYPGQTSNQIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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