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Report for CCDS35882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35882.1 Public Mus musculus 10 Lama4 23 108 98 CCDS HistoryNCBI Gene:16775Re-query CCDS DB by CCDS ID:35882.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019992.5 ENSMUSP00000019992.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019992.5Link to Ensembl Protein Viewer:ENSMUSP00000019992.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019992Re-query CCDS DB by Protein ID:ENSMUSP00000019992
Original member Current member NCBI NM_010681.4 NP_034811.2 Accepted alive Link to Nucleotide Sequence:NM_010681.4Link to Protein Sequence:NP_034811.2Re-query CCDS DB by Nucleotide ID:NM_010681Re-query CCDS DB by Protein ID:NP_034811Link to BLAST:NP_034811.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034811.2 1816 P97927 1816 100% 0 0

Chromosomal Locations for CCDS 35882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 38965955 38966149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39005412 39005513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39010998 39011122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39017321 39017401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39026535 39026749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39028622 39028696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39030433 39030584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39033011 39033121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39042581 39042692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39045653 39045820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39047934 39048127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39053741 39053857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39056777 39056925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39060127 39060268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39061354 39061450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39065604 39065720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39067855 39068034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39069955 39070094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39072715 39072894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39073565 39073710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39074125 39074287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39074664 39074797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39075356 39075527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39078720 39078851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39080482 39080624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39082728 39082866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39083269 39083406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39087253 39087386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39088287 39088451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39088759 39088906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39092130 39092317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39094895 39095084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39097083 39097238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39098327 39098486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39103488 39103618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39105137 39105230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39105962 39106081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 39109888 39110033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5451 nt):
ATGGGTTGGAGCACAGCTTGGTGCTCAGTCCTGGCCCTGTGGCTCCTCTGGTGTGCTGTCTGCTCCAACG
CAGCGTCAGGGGACGGCAATGCGTTTCCTTTTGACATCGAGGGGAGCGCAGTGGTCGGCAGGCAAGACCC
ATCGGAGACTAGCGACTCAGGCGTGACACTGGGACGCCTGCCGCCTGCTGCTGAGAGATGTGACGCTGGA
TTCTTCCGCACACTGTCAGGAGAATGTGCACCCTGTGACTGTAATGGCAATTCCCATGAGTGCTTGGATG
GCTCCGGATTCTGTCTGCACTGCCAGCGGAACACAACAGGAGAGCACTGTGAAAAATGTCTGGATGGCTA
TATTGGAGACTCCATCAGAGGCACACCCCGGTTCTGCCAGCCGTGCCCCTGTCCCTTGCCCCACCTGGCC
AACTTTGCAGAATCCTGCTACAGGAAAAATGGAGCTGTTCGGTGTATTTGTAAAGAAAACTATGTTGGAC
CTAACTGTGAAAGATGTGCTCCTGGTTACTATGGAAACCCCTTACTCATTGGAAGCACCTGTAAGAAATG
TGACTGCAGTGGAAATTCGGATCCCAACCTGATCTTTGAAGACTGTGATGAAATCACTGGCCAGTGCAGG
AACTGCTTACGAAATACCACCGGATTCAAGTGTGAACGCTGTGCACCTGGTTACTATGGAGACGCCAGGA
CAGCCAAGAACTGTGCAGTGTGCAACTGTGGGGGCGGCCCGTGTGACAGTGTAACCGGAGAGTGCTTGGA
AGAAGGATTTGAAGTCCCTACAGGCTGTGATAAGTGCGTCTGGGACTTGACCGATGACCTGCGATTAGCA
GCGCTCTCCATCGAAGAGAGCAAATCCGGGCTGCTGAGCGTGTCCTCTGGCGCTGCGGCGCATAGACACG
TGACCGACATGAACTCTACCATCCACCTCCTCAGAACAAGGCTGTCAGAAAGAGAAAACCAGTATACCCT
AAGAAAGATACAGATAAACAACTCGGAGAACACACTGAGAAGCCTCCTGCCTGATGTAGAGGGACTCCAT
GAGAAGGGAAGTCAAGCCTCAAGAAAGGGTATGCTGGTTGAGAAGGAAAGCATGGATACAATTGACCAAG
CAACCCATCTTGTCGAGCAAGCCCACAACATGAGGGACAAAATCCAAGAGATCAACAGCAAGATGCTCTA
CTATGGAGAGAATCAGGAACTTGGCCCCGAGGAAATAGCTGAGAAGCTGGTGTTGGCCCAGAAAATGCTG
GAAGAGATCCGAAGCCGGCAGCCATTCCTCACCCATCGGGAGCTGGTGGATGAGGAGGCAGATGAGGCCC
AGGAATTGCTGAGCCAAGCTGAGAACTGGCAGCGGCTGCACAATGACACCCGCTCTTTATTCCCCGTGGT
GCTGGAGCAGCTGGACGACTACAACGCTAAGCTGTCCGACCTCCAGGAATCCATTAACCAGGCCCTCGAC
CATGTCAGGGATGCAGAAGACATGAATAGAGCCATCACTTTCAAGCAGCGGGACCATGAGAAACAACATG
AGAGAGTGAAGGAACAGATGGAAGTTGTGGGTGCCTCTCTGAGTATGTCTGCAGACTCTCTTACCATACC
TCAGCTCACTCTTGAGGAACTTGATGAGATAATAAAGAATGCATCTGGAATTTATGCAGAAATAGATGGA
GCCAAAAATGAGCTGCAAGGAAAACTATCCAACCTGAGTAACCTCAGTCATGACTTGGTTCAGGAAGCTA
CGGACCATGCATACAATCTTCAACAGGAAGCCGATGAGCTAAGCAGAAATTTGCACAGTTCAGACATGAA
CGGGCTGGTACAGAAGGCTTTGGATGCATCAAACGTCTATGAAAATATCGCCAATTATGTCAGTGAAGCC
AACGAAACAGCAGAACTTGCTCTGAATATCACTGATCGAATTTATGATGCTGTGAGTGGGATTGACACGC
AGATCATTTACCATAAGGATGAAAGTGACAACCTTCTCAATCAAGCCAGAGAGCTGCAGGCCAAGGCAGA
TTCTAGCAATGATGAAGCAGTGGCTGACACCAGCAGGCGTGTGGGTGGAGCCCTGTGGAGGAAGGGCGCC
CTCAGAGACAGACTGAATGATGCTGTTAAGCAACTACAGGCAGCAGAGAGAGGGGACGCCCACCAGCGCC
TGGGCCAGTCCAAGCTCTTCATTGAGGAAGCTAACAAGACGACAGCGGCTGTCCAACAGGTTACCACACC
AATGGCTAACAACCTCAGCAACTGGTCCCAGAACCTGCAGACCTTTGACTCATCTGCATATAACACTGCA
GTGGACTCTGCTCGGGACGCAGTGAGAAACCTCACCGAGGTTGTCCCCCAGCTTCTGGATCAGCTTCGTA
CTGTGGAGCAGAAGCGGCCTGCAAGCAACATTTCTGCCAGCATCCAGAGGATCCGAGAGCTCATTGCTCA
AACCAGGAGTGTCGCAAGCAAGATCCAAGTCTCCATGATGTTTGATGGCCAGTCAGCTGTCGAAGTGCAC
CCCAAAGTCAGTGTGGATGACCTGAAGGCCTTCACATCCATCAGCTTGTACATGAAGCCTCCTCCAAAGC
CGGCAGAGCCCACTGGGGCCTGGGTAGCAGATCAGTTTGTCCTCTACCTCGGAAGCAAAAACGCCAAAAA
AGAATACATGGGTCTGGCAATCAAAAATGATAACCTGGTATACGTTTACAATTTGGGGATGAAAGATGTG
GAAATTCTCCTGGATTCCAAGCCTGTGAGCTCCTGGCCCGCTTACTTTAGTATTGTCAAGATTGAAAGGG
TAGGGAAACACGGAAAGGTGTTCTTGACAGTCCCCAGTCTCAGTAGCACAGCAGAAGAAAAGTTTATTAA
GAAGGGGGAGTTTGCAGGAGATGACTCCTTGCTGGATCTGACCCCTGAGGACACTGTGTTTTACGTTGGT
GGGGTGCCTGCGAACTTCAAGCTCCCTGCCAGCTTAAACCTGCCCAGCTACTCAGGCTGCCTAGAGCTGG
CCACTCTGAATAATGATGTGATCAGCTTGTACAACTTCAAGCACATCTATAATATGGATCCATCAAAGTC
AGTGCCCTGTGCCAGGGATAAACTGGCTTTCACTCAGAGTAGGGCTGCCAGCTACTTCTTCGATGGCTCC
AGTTATGCAGTGGTGAGGGACATCACGAGGAGAGGGAAGTTTGGTCAGGTGACTCGCTTTGACATAGAAA
TCCGAACACCAGCTGACAATGGCCTTGTGCTCCTGATGGTCAATGGCAGTATGTTTTTCAGCCTCGAAAT
GCGCAATGGCTACCTACATGTGTTCTATGACTTTGGATTCAGCAATGGCCCCGTGCATCTTGAAGACACG
TTGAAAAAAGCCCAGATTAATGATGCGAAATATCATGAGATCTCAATCATTTATCACAACGACAAAAAAA
TGATTTTGGTGGTGGACAGACGGCACGTTAAGAGCACAGACAATGAGAAGAAAAAGATTCCTTTCACGGA
CATCTACATCGGAGGTGCGCCCCAAGAAGTCTTACAGTCCAGGACCCTAAGAGCACACCTTCCCCTAGAT
ATCAACTTTAGGGGGTGCATGAAGGGGTTCCAGTTCCAAAAGAAAGATTTCAATTTACTGGAGCAGACAG
AAACCCTAGGAGTTGGTTATGGATGCCCAGAGGACTCTCTGATATCTCGCAGAGCATATTTCAATGGGCA
AAGTTTTATTGCTTCAATTCAGAAAATATCTTTCTTTGATGGCTTTGAAGGAGGCTTCAATTTCCGAACA
TTACAGCCAAATGGGTTACTATTCTACTACACATCAGGGTCGGACGTGTTTTCCATTTCACTGGACAACG
GCACTGTTGTCATGGACGTAAAGGGCATCAAGGTCATGTCAACAGACAAGCAGTACCACGATGGGCTGCC
CCACTTCGTGGTCACCTCCATCTCAGACACAAGATATGAACTGGTAGTAGACAAAAGCCGACTTCGAGGG
AAGAATCCAACAAAAGGGAAGGCAGAGCAGACTCAAACAACTGAGAAGAAGTTCTACTTTGGTGGCTCAC
CCATCAGTCCTCAGTATGCTAATTTCACTGGATGTATAAGCAATGCCTACTTTACCAGGTTGGATAGAGA
TGTGGAAGTCGAAGACTTCCAGCGCTATTCTGAAAAGGTCCACACTTCACTCTATGAGTGTCCGATTGAG
TCGTCACCTCTGTTTCTCCTTCACAAAAAAGGAAAGAATTCCTCAAAGCCTAAAACAAACAAACAGGGAG
AGAAGAGTAAGGATGCGCCTTCATGGGATCCTATTGGCCTGAAGTTTCTGGAACAGAAAGCTCCAAGAGA
TTCCCACTGCCACCTCTCCAGCAGCCCCAGGGCAATAGAACATGCCTATCAATATGGCGGCACGGCCAAC
AGTCGCCAGGAGTTTGAACACGAACAAGGAGATTTTGGTGAAAAATCCCAGTTTGCCATTCGTCTGAAGA
CCCGTTCCTCACATGGGATGATTTTCTATGTCTCAGACCAAGAAGAGAATGATTTCATGACCCTGTTCTT
GGCCCATGGTCGCTTGGTCTTTATGTTTAATGTTGGCCATAAGAAACTGAAGATTAGAAGCCAGGAGAAA
TACAATGATGGATTGTGGCATGATGTGATATTTATTCGGGAAAAGAGCAGTGGTCGACTGGTCATTGATG
GTCTACGAGTCCTAGAAGAAAGGCTTCCCCCTAGTGGCGCTGCCTGGAAAATCAAGGGTCCCATTTATCT
GGGAGGAGTGGCTCCCGGAAGAGCCGTGAAAAATGTCCAGATTACCTCCGTCTACAGCTTCAGTGGCTGC
CTTGGCAATCTCCAGCTCAATGGTGCCTCCATCACCTCCGCTTCTCAAACGTTTAGCGTGACCCCTTGCT
TTGAAGGGCCAATGGAAACAGGAACTTATTTTTCCACAGAAGGCGGCTATGTGGTTCTAGATGAGTCTTT
CAATATTGGGTTAAAATTTGAAATTGCCTTTGAAGTCCGCCCCCGGAGCAGTTCTGGAACCCTTGTCCAT
GGCCACAGCGTCAACGGGGAATACCTGAACGTGCACATGAGAAACGGACAGGTCATAGTGAAGGTCAACA
ACGGTGTCAGAGACTTTTCTACCTCAGTAACTCCCAAGCAGAATCTCTGTGATGGCAGATGGCACAGAAT
TACAGTTATTAGAGATTCAAACGTGGTTCAGTTGGATGTAGACTCAGAAGTGAACCATGTAGTTGGGCCG
TTGAATCCAAAGCCAGTTGATCACAGGGAGCCTGTGTTTGTTGGAGGTGTTCCAGAGTCTTTACTGACAC
CACGTTTGGCTCCCAGCAAACCCTTCACCGGCTGCATCCGCCACTTTGTAATTGACAGCCGCCCTGTGAG
CTTCAGTAAAGCTGCCCTGGTCAGTGGTGCTGTGAGCATCAACTCCTGTCCCACAGCCTGA

Translation (1816 aa):
MGWSTAWCSVLALWLLWCAVCSNAASGDGNAFPFDIEGSAVVGRQDPSETSDSGVTLGRLPPAAERCDAG
FFRTLSGECAPCDCNGNSHECLDGSGFCLHCQRNTTGEHCEKCLDGYIGDSIRGTPRFCQPCPCPLPHLA
NFAESCYRKNGAVRCICKENYVGPNCERCAPGYYGNPLLIGSTCKKCDCSGNSDPNLIFEDCDEITGQCR
NCLRNTTGFKCERCAPGYYGDARTAKNCAVCNCGGGPCDSVTGECLEEGFEVPTGCDKCVWDLTDDLRLA
ALSIEESKSGLLSVSSGAAAHRHVTDMNSTIHLLRTRLSERENQYTLRKIQINNSENTLRSLLPDVEGLH
EKGSQASRKGMLVEKESMDTIDQATHLVEQAHNMRDKIQEINSKMLYYGENQELGPEEIAEKLVLAQKML
EEIRSRQPFLTHRELVDEEADEAQELLSQAENWQRLHNDTRSLFPVVLEQLDDYNAKLSDLQESINQALD
HVRDAEDMNRAITFKQRDHEKQHERVKEQMEVVGASLSMSADSLTIPQLTLEELDEIIKNASGIYAEIDG
AKNELQGKLSNLSNLSHDLVQEATDHAYNLQQEADELSRNLHSSDMNGLVQKALDASNVYENIANYVSEA
NETAELALNITDRIYDAVSGIDTQIIYHKDESDNLLNQARELQAKADSSNDEAVADTSRRVGGALWRKGA
LRDRLNDAVKQLQAAERGDAHQRLGQSKLFIEEANKTTAAVQQVTTPMANNLSNWSQNLQTFDSSAYNTA
VDSARDAVRNLTEVVPQLLDQLRTVEQKRPASNISASIQRIRELIAQTRSVASKIQVSMMFDGQSAVEVH
PKVSVDDLKAFTSISLYMKPPPKPAEPTGAWVADQFVLYLGSKNAKKEYMGLAIKNDNLVYVYNLGMKDV
EILLDSKPVSSWPAYFSIVKIERVGKHGKVFLTVPSLSSTAEEKFIKKGEFAGDDSLLDLTPEDTVFYVG
GVPANFKLPASLNLPSYSGCLELATLNNDVISLYNFKHIYNMDPSKSVPCARDKLAFTQSRAASYFFDGS
SYAVVRDITRRGKFGQVTRFDIEIRTPADNGLVLLMVNGSMFFSLEMRNGYLHVFYDFGFSNGPVHLEDT
LKKAQINDAKYHEISIIYHNDKKMILVVDRRHVKSTDNEKKKIPFTDIYIGGAPQEVLQSRTLRAHLPLD
INFRGCMKGFQFQKKDFNLLEQTETLGVGYGCPEDSLISRRAYFNGQSFIASIQKISFFDGFEGGFNFRT
LQPNGLLFYYTSGSDVFSISLDNGTVVMDVKGIKVMSTDKQYHDGLPHFVVTSISDTRYELVVDKSRLRG
KNPTKGKAEQTQTTEKKFYFGGSPISPQYANFTGCISNAYFTRLDRDVEVEDFQRYSEKVHTSLYECPIE
SSPLFLLHKKGKNSSKPKTNKQGEKSKDAPSWDPIGLKFLEQKAPRDSHCHLSSSPRAIEHAYQYGGTAN
SRQEFEHEQGDFGEKSQFAIRLKTRSSHGMIFYVSDQEENDFMTLFLAHGRLVFMFNVGHKKLKIRSQEK
YNDGLWHDVIFIREKSSGRLVIDGLRVLEERLPPSGAAWKIKGPIYLGGVAPGRAVKNVQITSVYSFSGC
LGNLQLNGASITSASQTFSVTPCFEGPMETGTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVH
GHSVNGEYLNVHMRNGQVIVKVNNGVRDFSTSVTPKQNLCDGRWHRITVIRDSNVVQLDVDSEVNHVVGP
LNPKPVDHREPVFVGGVPESLLTPRLAPSKPFTGCIRHFVIDSRPVSFSKAALVSGAVSINSCPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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