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Report for CCDS18701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18701.1 Public Mus musculus 4 Kpna6 23 108 98 CCDS HistoryNCBI Gene:16650Re-query CCDS DB by CCDS ID:18701.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102590.10 ENSMUSP00000099650.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102590.10Link to Ensembl Protein Viewer:ENSMUSP00000099650.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102590Re-query CCDS DB by Protein ID:ENSMUSP00000099650
Original member Current member NCBI NM_008468.4 NP_032494.3 Accepted alive Link to Nucleotide Sequence:NM_008468.4Link to Protein Sequence:NP_032494.3Re-query CCDS DB by Nucleotide ID:NM_008468Re-query CCDS DB by Protein ID:NP_032494Link to BLAST:NP_032494.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032494.3 536 O35345 536 100% 0 0

Chromosomal Locations for CCDS 18701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129647992 129648179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129649198 129649376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129650684 129650811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129651588 129651713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129653438 129653516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129653842 129654005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129654288 129654387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129654865 129654953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129655430 129655561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129656308 129656402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129657389 129657488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129657768 129657860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129661306 129661439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129672677 129672680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGAGACCATGGCAAGCCCAGGGAAGGACAATTATCGAATGAAGAGCTATAAGAACAATGCCTTAAACC
CTGAGGAAATGAGACGAAGGAGGGAGGAAGAGGGCATTCAGCTTCGGAAACAGAAGCGGGAACAACAACT
TTTTAAACGGAGAAATGTAGAGCTGATTAATGAAGAAGCTGCCATGTTTGATAGTCTGCTGATGGATTCC
TACGTGAGCTCTACAACTGGGGAGAGCGTGATCACGAGAGAGATGGTAGAGATGCTCTTCTCGGACGACT
CTGACTTGCAGTTAGCAACCACGCAGAAATTCCGGAAACTCCTGTCCAAAGAGCCGAGTCCTCCAATAGA
TGAAGTTATTAACACTCCAGGAGTAGTTGATCGGTTTGTGGAGTTTCTGAAGAGAAATGAGAATTGTACA
TTGCAGTTTGAAGCTGCCTGGGCTCTAACAAACATTGCCTCTGGAACGTCTCAGCAGACCAAAATTGTCA
TTGAAGCAGGAGCTGTCCCCATTTTTATAGAGTTACTTAACTCAGACTTTGAAGATGTACAAGAACAGGC
AGTGTGGGCGCTTGGAAACATCGCTGGAGATAGCTCGCTTTGCAGGGATTATGTCTTGAATTGCTCCATC
CTTAACCCCTTGTTAACACTCCTTACTAAGTCCACACGACTGACAATGACACGGAATGCAGTCTGGGCCC
TGTCAAACCTCTGCCGAGGCAAGAACCCTCCTCCAGAGTTTGCAAAGGTCTCTCCTTGTTTGCCTGTATT
GTCCCGACTGCTCTTCAGCAGTGACTCAGACTTGCTGGCAGATGCTTGCTGGGCCCTCTCCTACCTGTCT
GATGGCCCCAATGAGAAGATCCAGGCAGTCATAGACTCTGGAGTCTGCCGGAGATTGGTAGAGCTTCTGA
TGCACAACGATTACAAAGTGGCGTCTCCTGCCTTGAGAGCTGTGGGTAATATTGTCACTGGGGATGACAT
CCAGACCCAGGTCATTCTTAATTGTTCAGCCCTCCCTTGCCTCCTCCACCTACTGAGCAGCTCTAAGGAA
TCAATCCGGAAGGAAGCTTGCTGGACCATTTCAAACATCACTGCTGGCAACAGGGCTCAAATACAGGCTG
TCATAGATGCAAACATCTTCCCTGTATTGATTGAAATCCTTCAGAAAGCAGAGTTCCGTACAAGGAAAGA
AGCAGCCTGGGCCATCACCAACGCCACATCAGGAGGAACTCCTGAGCAAATCAGGTACCTGGTATCACTG
GGCTGCATTAAGCCCCTGTGTGACTTGCTGACTGTAATGGATTCAAAAATTGTGCAAGTGGCCCTCAATG
GACTAGAGAACATTCTTCGGCTTGGAGAGCAAGAAAGCAAGCGTAGTGGCTCAGGGGTCAATCCCTACTG
TGGCCTCATCGAGGAAGCCTATGGCTTGGATAAAATTGAGTTTCTCCAGAGCCACGAGAACCAGGAAATC
TACCAGAAGGCCTTTGACCTCATTGAGCACTACTTTGGTGTAGAGGATGACGACAGCAGCCTGGCTCCTC
AGGTGGATGAGACGCAACAGCAGTTCATCTTCCAGCAGCCTGAGGCCCCCATGGAGGGCTTCCAGCTATA
A

Translation (536 aa):
METMASPGKDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDS
YVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCT
LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSI
LNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLS
DGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKE
SIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSL
GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEI
YQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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