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Report for CCDS27452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27452.1 Public Mus musculus 15 Eif3e 23 108 98 CCDS HistoryNCBI Gene:16341Re-query CCDS DB by CCDS ID:27452.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022960.3 ENSMUSP00000022960.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022960.3Link to Ensembl Protein Viewer:ENSMUSP00000022960.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022960Re-query CCDS DB by Protein ID:ENSMUSP00000022960
Original member Current member NCBI NM_008388.2 NP_032414.1 Accepted alive Link to Nucleotide Sequence:NM_008388.2Link to Protein Sequence:NP_032414.1Re-query CCDS DB by Nucleotide ID:NM_008388Re-query CCDS DB by Protein ID:NP_032414Link to BLAST:NP_032414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032414.1 445 P60229 445 100% 0 0

Chromosomal Locations for CCDS 27452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 43250199 43250237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43251480 43251614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43252205 43252307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43261060 43261169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43262599 43262700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43263209 43263335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43265501 43265625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43266134 43266259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43270879 43270983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43272276 43272318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43275237 43275354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43278308 43278422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 43282603 43282692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCGGAGTACGACCTGACTACTCGCATCGCGCATTTTCTGGATCGGCACCTGGTCTTTCCGCTTCTTG
AGTTTCTCTCTGTGAAAGAGATTTATAATGAAAAAGAATTATTACAAGGAAAATTAGATCTTCTTAGTGA
TACCAATATGGTGGATTTTGCTATGGATGTTTACAAAAACCTTTATTCTGATGATATCCCTCATGCTTTG
AGAGAAAAAAGAACCACAGTTGTTGCGCAGCTGAAACAGCTCCAGGCAGAAACAGAACCAATCGTGAAGA
TGTTTGAAGATCCAGAAACTACAAGGCAGATGCAGTCAACCAGGGATGGCAGGATGTTATTTGACTACCT
GGCAGACAAACATGGGTTTAGGCAAGAGTACTTAGATACACTCTACAGATACGCAAAATTCCAGTATGAG
TGTGGAAATTACTCTGGAGCTGCAGAGTATCTTTACTTCTTTAGAGTTTTGGTCCCAGCAACAGATAGAA
ATGCTTTAAGTTCGCTCTGGGGAAAACTGGCCTCTGAAATCTTAATGCAGAATTGGGATGCAGCCATGGA
AGACCTTACTCGATTAAAAGAAACCATAGACAATAATTCTGTGAGTTCTCCACTCCAGTCTCTTCAGCAG
CGAACATGGCTCATTCATTGGTCTCTATTTGTTTTTTTCAACCATCCAAAGGGCCGTGATAACATTATTG
ATCTCTTCCTTTACCAACCACAGTATCTTAATGCAATTCAGACAATGTGTCCACATATTCTACGCTATTT
GACTACTGCCGTCATAACCAACAAAGATGTGCGGAAACGCCGGCAGGTGCTGAAAGATCTGGTGAAAGTG
ATTCAACAGGAGTCTTACACATATAAAGACCCAATTACAGAATTTGTTGAATGCCTATATGTTAACTTTG
ATTTTGACGGGGCTCAGAAAAAGCTGAGAGAATGTGAATCAGTGCTCGTGAATGACTTCTTCCTGGTAGC
GTGTCTGGAGGACTTCATTGAGAATGCCCGTCTCTTCATATTTGAGACGTTTTGTCGTATCCACCAGTGT
ATCAGCATTAATATGTTAGCAGACAAACTGAATATGACTCCAGAAGAAGCTGAAAGATGGATTGTGAATT
TGATTAGAAATGCGAGGTTGGATGCCAAGATTGATTCTAAACTAGGTCATGTGGTAATGGGCAACAATGC
AGTCTCGCCCTACCAGCAAGTGATTGAAAAGACCAAAAGCCTTTCTTTTAGAAGCCAAATGTTGGCCATG
AATATCGAAAAGAAACTTAATCAGAACAGTAGATCAGAGGCTCCCAACTGGGCAACCCAAGACTCTGGCT
TCTATTAA

Translation (445 aa):
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHAL
REKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYE
CGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQ
RTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKV
IQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQC
ISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM
NIEKKLNQNSRSEAPNWATQDSGFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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