NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9032.1 Public Homo sapiens 12 TMTC3 24 110 108 CCDS HistoryNCBI Gene:160418Re-query CCDS DB by CCDS ID:9032.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9032.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266712.11 ENSP00000266712.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266712.11Link to Ensembl Protein Viewer:ENSP00000266712.6Re-query CCDS DB by Nucleotide ID:ENST00000266712Re-query CCDS DB by Protein ID:ENSP00000266712
Original member Current member NCBI NM_181783.4 NP_861448.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181783.4Link to Protein Sequence:NP_861448.2Re-query CCDS DB by Nucleotide ID:NM_181783Re-query CCDS DB by Protein ID:NP_861448Link to BLAST:NP_861448.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861448.2 914 Q6ZXV5-2 914 100% 0 0

Chromosomal Locations for CCDS 9032.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 88148316 88148504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88153291 88153509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88154288 88154387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88160114 88160229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88160679 88160851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88166330 88166582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88172597 88172745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88174607 88174727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88176208 88176319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88188843 88188946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88190453 88190622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88192604 88192830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 88194838 88195649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGGCTAATATTAACCTAAAAGAAATAACCTTAATAGTAGGTGTGGTTACTGCCTGCTATTGGAACAGCC
TCTTTTGTGGTTTTGTTTTTGATGATGTTTCAGCAATACTGGATAACAAAGACTTGCATCCATCTACACC
TTTAAAAACTTTATTTCAAAATGACTTCTGGGGAACCCCTATGTCTGAGGAGAGAAGCCACAAGTCTTAC
CGTCCCTTAACAGTATTGACATTTCGCTTAAATTATTTGTTAAGTGAACTAAAACCAATGTCATATCATC
TCCTGAATATGATTTTTCATGCTGTGGTTAGTGTGATATTTCTCAAAGTATGCAAACTTTTTCTGGACAA
CAAGAGTAGTGTGATTGCTTCTTTACTTTTTGCAGTGCACCCAATACACACAGAAGCAGTAACAGGAGTT
GTTGGAAGAGCAGAACTTTTGTCATCTATCTTTTTTCTAGCAGCTTTTTTGTCATATACCAGATCAAAAG
GACCAGACAATTCCATAATATGGACTCCAATTGCCTTGACAGTGTTTTTAGTGGCTGTTGCAACATTATG
TAAAGAACAAGGAATAACAGTTGTAGGAATTTGCTGTGTGTATGAAGTGTTTATTGCCCAGGGGTATACT
TTGCCATTACTATGTACTACTGCTGGACAGTTTCTCCGTGGAAAGGGTAGCATTCCATTTTCTATGCTGC
AGACACTAGTAAAACTCATTGTCTTGATGTTCAGTACATTATTACTTGTTGTGATTAGAGTCCAGGTTAT
TCAATCCCAACTTCCAGTATTCACCAGGTTTGATAACCCAGCTGCTGTAAGCCCAACTCCTACAAGGCAA
CTAACTTTTAACTACCTCCTTCCTGTGAATGCTTGGTTGTTATTAAATCCTTCAGAGCTCTGCTGTGATT
GGACCATGGGAACAATACCACTTATAGAGTCATTACTAGATATTCGAAATCTGGCCACATTTACTTTCTT
TTGTTTTCTGGGGATGTTGGGAGTATTCAGTATCAGATACTCTGGTGATTCCTCCAAGACTGTTTTAATG
GCGCTTTGTTTAATGGCATTACCATTTATTCCTGCATCGAACCTTTTTTTTCCAGTTGGATTTGTTGTTG
CCGAGCGAGTATTATATGTTCCCAGCATGGGGTTCTGTATTTTGGTAGCCCATGGATGGCAGAAAATATC
AACAAAAAGTGTATTTAAAAAGCTATCCTGGATTTGTCTGTCTATGGTGATACTCACTCATTCCTTAAAA
ACATTCCACAGAAATTGGGATTGGGAGTCTGAATATACATTGTTTATGTCAGCCTTGAAGGTAAATAAAA
ATAATGCCAAACTTTGGAATAATGTGGGTCATGCTCTGGAAAATGAAAAGAACTTTGAGAGAGCTTTGAA
ATACTTCTTACAGGCTACCCATGTTCAGCCAGATGATATTGGTGCCCATATGAATGTAGGAAGAACTTAT
AAAAATTTAAATAGAACCAAAGAAGCTGAAGAATCTTACATGATGGCTAAATCACTGATGCCTCAAATTA
TTCCTGGTAAAAAATATGCAGCCAGAATTGCCCCTAACCACCTAAATGTTTATATCAATCTGGCTAACCT
GATCCGAGCAAATGAGTCCCGACTGGAAGAAGCAGATCAGCTGTACCGTCAAGCAATAAGCATGAGGCCC
GACTTCAAGCAGGCTTACATTAGCAGAGGAGAATTGCTTTTAAAAATGAATAAACCTCTTAAAGCAAAGG
AAGCATATCTTAAAGCACTAGAGCTGGACAGAAATAATGCAGATCTTTGGTACAACTTGGCAATTGTACA
TATTGAACTTAAAGAACCAAATGAAGCCCTAAAAAACTTTAATCGTGCTCTGGAACTAAATCCAAAGCAT
AAACTAGCATTATTCAACTCTGCTATAGTAATGCAAGAATCAGGTGAGGTTAAACTCAGACCTGAAGCTA
GAAAACGACTTCTAAGTTATATAAATGAAGAGCCACTAGATGCTAATGGGTATTTCAATTTGGGAATGCT
TGCCATGGATGACAAAAAGGACAATGAAGCAGAGATTTGGATGAAGAAAGCCATAAAGTTACAAGCCGAC
TTCCGAAGTGCTTTGTTTAATCTGGCTCTCCTGTATTCCCAGACTGCAAAGGAATTAAAGGCTTTGCCAA
TTTTGGAGGAGTTACTCAGATACTACCCTGATCATATCAAGGGCCTCATTTTAAAAGGAGACATTCTGAT
GAATCAAAAGAAAGATATACTAGGAGCAAAAAAATGTTTTGAAAGGATTTTGGAGATGGATCCAAGCAAT
GTGCAAGGAAAACACAATCTTTGTGTTGTTTATTTTGAAGAAAAAGACTTATTAAAAGCTGAAAGATGCC
TTCTTGAAACACTGGCATTAGCACCACATGAAGAATATATTCAGCGCCATTTGAATATAGTCAGGGATAA
GATTTCCTCATCTAGTTTTATAGAGCCAATATTCCCAACCAGTAAGATTTCAAGTGTGGAAGGAAAGAAA
ATTCCAACTGAAAGTGTAAAAGAAATTAGAGGTGAATCCAGACAAACACAAATAGTAAAAACAAGTGATA
ATAAAAGTCAGTCTAAATCCAACAAACAATTAGGAAAAAATGGAGACGAAGAGACACCCCACAAAACAAC
AAAAGACATCAAAGAAATTGAGAAGAAAAGAGTTGCTGCTTTAAAAAGACTAGAAGAGATTGAACGTATT
TTAAATGGTGAATAA

Translation (914 aa):
MANINLKEITLIVGVVTACYWNSLFCGFVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKSY
RPLTVLTFRLNYLLSELKPMSYHLLNMIFHAVVSVIFLKVCKLFLDNKSSVIASLLFAVHPIHTEAVTGV
VGRAELLSSIFFLAAFLSYTRSKGPDNSIIWTPIALTVFLVAVATLCKEQGITVVGICCVYEVFIAQGYT
LPLLCTTAGQFLRGKGSIPFSMLQTLVKLIVLMFSTLLLVVIRVQVIQSQLPVFTRFDNPAAVSPTPTRQ
LTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRNLATFTFFCFLGMLGVFSIRYSGDSSKTVLM
ALCLMALPFIPASNLFFPVGFVVAERVLYVPSMGFCILVAHGWQKISTKSVFKKLSWICLSMVILTHSLK
TFHRNWDWESEYTLFMSALKVNKNNAKLWNNVGHALENEKNFERALKYFLQATHVQPDDIGAHMNVGRTY
KNLNRTKEAEESYMMAKSLMPQIIPGKKYAARIAPNHLNVYINLANLIRANESRLEEADQLYRQAISMRP
DFKQAYISRGELLLKMNKPLKAKEAYLKALELDRNNADLWYNLAIVHIELKEPNEALKNFNRALELNPKH
KLALFNSAIVMQESGEVKLRPEARKRLLSYINEEPLDANGYFNLGMLAMDDKKDNEAEIWMKKAIKLQAD
FRSALFNLALLYSQTAKELKALPILEELLRYYPDHIKGLILKGDILMNQKKDILGAKKCFERILEMDPSN
VQGKHNLCVVYFEEKDLLKAERCLLETLALAPHEEYIQRHLNIVRDKISSSSFIEPIFPTSKISSVEGKK
IPTESVKEIRGESRQTQIVKTSDNKSQSKSNKQLGKNGDEETPHKTTKDIKEIEKKRVAALKRLEEIERI
LNGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH