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Report for CCDS5941.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5941.2 Public Homo sapiens 7 RBM33 24 110 108 CCDS HistoryNCBI Gene:155435Re-query CCDS DB by CCDS ID:5941.2See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5941.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000401878.8 ENSP00000384160.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000401878.8Link to Ensembl Protein Viewer:ENSP00000384160.3Re-query CCDS DB by Nucleotide ID:ENST00000401878Re-query CCDS DB by Protein ID:ENSP00000384160
Original member Current member NCBI NM_053043.3 NP_444271.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053043.3Link to Protein Sequence:NP_444271.2Re-query CCDS DB by Nucleotide ID:NM_053043Re-query CCDS DB by Protein ID:NP_444271Link to BLAST:NP_444271.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444271.2 1170 Q96EV2-1 1170 100% 0 0

Chromosomal Locations for CCDS 5941.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 155644877 155644919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155665175 155665253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155672867 155672915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155678608 155678684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155680590 155680908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155700773 155700944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155706860 155707068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155711203 155711455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155718385 155718443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155737530 155737662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155738060 155738403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155739715 155740026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155741819 155742106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155744961 155745602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155763812 155764018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155766467 155766655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155774559 155774647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 155774993 155775041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3513 nt):
ATGGCGGCCGCCCTGGGAGCGAGCGGAGGAGCAGGCGCCGGAGATGATGACTTTGACCAGTTTGATAAGC
CTGGCGCGGAACGGTCGTGGAGAAGAAGAGCTGCTGATGAGGACTGGGACAGTGAACTTGAAGATGATTT
ACTTGGAGAAGATTTGCTATCTGGCAAAAAGAATCAGTCGGATTTGTCAGATGAAGAGCTAAATGATGAT
CTTTTGCAGAGTGATAATGAAGATGAAGAAAATTTCAGTTCTCAGGGTGTTACAATTAGTCTGAATGCTA
CATCTGGCATGGTTACATCATTTGAACTCTCTGACAACACTAACGACCAATCTGGAGAACAGGAATCTGA
GTATGAACAAGAACAAGGAGAGGATGAACTGGTTTATCACAAATCTGATGGATCAGAATTGTATACTCAA
GAGTACCCAGAAGAAGGACAGTATGAAGGCCACGAAGCTGAGTTGACAGAAGACCAAATAGAATATGTGG
AAGAGCCAGAGGAGGAGCAGCTTTACACTGATGAAGTGTTAGACATCGAGATCAATGAACCTTTAGATGA
ATTTACAGGAGGTATGGAAACATTGGAACTTCAAAAGGACATCAAAGAAGAATCAGATGAAGAAGAAGAA
GATGATGAAGAATCTGGACGATTACGTTTCAAAACTGAAAGGAAAGAAGGAACAATTATTAGGCTCTCAG
ATGTAACTAGAGAGAGAAGGAACATTCCAGAAACTTTGGAGCTTTCAGCAGAGGCCAAGGCAGCATTGCT
TGAATTTGAAGAAAGGGAGCGACAGCATAAACAAGGACGCTACAGCTCCAGGCGGGGAGGACGGCGAGGA
GGTCCGCTGATGTGTCGTGGTGTGGGGGACCAGAGGAGAGAGAGCACCGAGAGGGGCAGGATGAAGGACC
ACAGACCTGCGCTGCTTCCTACACAGCCTCCTGTCGTGCCCCAGGCTCCCCCTCCACCGCCACCGCCGCC
TCAGCAGCAGCCGATCAGAAGCCTGTTCCAGCCGCAGCCGCTGCAGCCGCTGCTTCCGGTGCAGCACCCG
CACCACCCATCCCCGCCTCAGGGAATGCACATGCCTCCCCAGCTAGAGACCCCAAGGATGATGATGACCC
CGCCACCCGTGACTCCACAGCAGCCCAAGAACATACACATCAACCCGCACTTCAAAGGGACGGTGGTCAC
GCCTGTTCAAGTGCCCTTGCTACCAGTTCCGAGCCAGCCGAGACCTGCCGTGGGACCCCAGAGATTCCCA
GGCCCTCCAGAATTTCCACAGCATACACCTGGACCTGTTCCCAACAGTTTCAGCCAGCCCCCACGACTCC
CTCTCCAGGACCAGTGGAGAGCCCCACCCCCGCCTCAGGATCGAGACCCTTTCTTCTTAGGAGTTTCAGG
TGAACCAAGATTCCCGAGCCATCTTTTTCTGGAACAGCGAAGTCCCCCTCCACCACCACCGCCTCCTACC
CTTCTTAACAGTAGCCATCCTGTTCCTACTCAGAGTCCTCTACCATTCACTCAGCCAGGACCAGCATTTA
ATCAGCAAGGACAGCAGCCAGTGTTCCCAAGAGAGCGGCCCGTACGACCAGCCTTGCAGCCTCCAGGTCC
GGTGGGGATTCTGCACTTTAGCCAGCCTGGGTCGGCAACCACACGGCCCTTCATTCCTCCTAGACAGCCG
TTCCTGCCAGGCCCAGGACAGCCGTTTCTGCCCACACACACACAGCCCAACCTGCAGGGGCCGTTGCATC
CTCCATTGCCCCCTCCGCATCAGCCTCAGCCTCAGCAACCTCAGCAACAGCCCCCGCCACAGCACCAGCC
TCCGCACCAGCCCCCGCACCAGCCCCCGCCCCAGCACCAGCCCCCACCCCAGCACCCACCACAGCACCCG
CCGCAGCACCAGCACCACCACCACCACCACCACCTGTCCGTCCCGCCCCCTCCTTTGATGCCGATGTCTC
AGCCACAGTTCCGGCCTCACGTACAGACCGCTCAGCCTCAGGCCAGCAGCAGCCGGATGCAGTGCCCCCA
GCGCCAGGGGCTCCGGCATAATACAACTTCTCAGAATGTAAGCAAGCGGCCCATGCAGCAAATGCAGCCC
ACTGCGCCAAGGAACAGCAATTTGCGTGAATTACCCATAGCGCCGTCACACGTGATAGAAATGAGCAGCA
GCCGCTGCTCTGCCACGCCCTCAGCACAAGTGAAACCTATCGTCAGCGCGTCACCACCCTCGCGGGCCGT
GGCGGGTTCCAGAAGCTCACAGGGAAAGACGGAAGTGAAAGTCAAGCCAGCTAGCCCTGTGGCTCAACCT
AAAGAAGAGGCAAAAACAGAAACAGAGTTTCCTGATGAAGATGAGGAAACAAGGTTATATCGCTTAAAGA
TAGAAGAACAGAAACGCCTAAGAGAAGAAATCCTGAAACAGAAGGAGTTACGGCGGCAGCAGCAGGCTGG
TGCCAGGAAGAAGGAGCTGCTGGAGAGACTCGCGCAGCAACAGCAGCAGCTGTACGCTCCCCCACCCCCA
GCAGAGCAGGAAGAGCAGGCACTGTCACCATCACCCACCAACGGTAACCCACTGTTGCCCTTTCCAGGTG
CACAGGTCAGACAAAATGTGAAGAACAGACTTCTTGTTAAAAACCAGGATGTCAGTATTTCAAACGTTCA
GCCCAAAACATCCAATTTTGTACCATCCAGTGCCAACATGCAGTATCAAGGACAACAGATGAAAGCACTG
AAACATTTGAGACAGACCAGAACAGTTCCTCAAAGTCAGACTCAGCCGCTGCATAAAGTGCTCCCGATCA
AACCTGCAGATGTGGAGGAGCCAGCTGTCCCCCAGACTCCTCGAGTGGCGTCCATCCAGGGCCGGCCCCA
GGACACAAAGCCTGGCGTGAAAAGGACTGTCACGCACAGGACAAACAGTGGTGGTGGAGACGGGCCCCAC
ATCAGCTCCAAGGTCAGGGTGATTAAGCTGTCAGGTGGGGGAGGAGAGAGCGATGGCTTTTTTCACCCAG
AAGGCCAGCCCCAGCGGCTTCCCCAGCCTCCGGAAGTGGGACCACAGCCTGCCCGCAAGGTGACGCTGAC
CAGGGGGGGCCTCCAGCAGCCCCCACATCTGCCAGCGGGGCCCCACGCACACTCGCCTGTCCCTCCAGGG
ATCAAAAGCATCCAAGGAATTCACCCGGCGAAGAAGGCCATCATGCACGGACGAGGCAGAGGAGTGGCCG
GTCCCATGGGCCGGGGGCGCCTGATGCCAAACAAGCAGAACCTGCGGGTGGTGGAGTGCAAGCCCCAGCC
CTGCGTGGTGTCTGTGGAGGGGCTGTCCTCGTCCACCACGGATGCCCAGCTGAAGAGCCTGCTGATGTCA
GTGGGACCCATTCAGAGTTTACAGATGCTTCCTCAGCAACGGAAAGCCATAGCTAAGTTCAAGGAGCCAG
CCCACGCATTAGCATTTCAGCAGAAATTCCACAGGCATATGATAGATTTGTCCCACATAAATGTGGCCCT
GATCGTGGAGTGA

Translation (1170 aa):
MAAALGASGGAGAGDDDFDQFDKPGAERSWRRRAADEDWDSELEDDLLGEDLLSGKKNQSDLSDEELNDD
LLQSDNEDEENFSSQGVTISLNATSGMVTSFELSDNTNDQSGEQESEYEQEQGEDELVYHKSDGSELYTQ
EYPEEGQYEGHEAELTEDQIEYVEEPEEEQLYTDEVLDIEINEPLDEFTGGMETLELQKDIKEESDEEEE
DDEESGRLRFKTERKEGTIIRLSDVTRERRNIPETLELSAEAKAALLEFEERERQHKQGRYSSRRGGRRG
GPLMCRGVGDQRRESTERGRMKDHRPALLPTQPPVVPQAPPPPPPPPQQQPIRSLFQPQPLQPLLPVQHP
HHPSPPQGMHMPPQLETPRMMMTPPPVTPQQPKNIHINPHFKGTVVTPVQVPLLPVPSQPRPAVGPQRFP
GPPEFPQHTPGPVPNSFSQPPRLPLQDQWRAPPPPQDRDPFFLGVSGEPRFPSHLFLEQRSPPPPPPPPT
LLNSSHPVPTQSPLPFTQPGPAFNQQGQQPVFPRERPVRPALQPPGPVGILHFSQPGSATTRPFIPPRQP
FLPGPGQPFLPTHTQPNLQGPLHPPLPPPHQPQPQQPQQQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHP
PQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQRQGLRHNTTSQNVSKRPMQQMQP
TAPRNSNLRELPIAPSHVIEMSSSRCSATPSAQVKPIVSASPPSRAVAGSRSSQGKTEVKVKPASPVAQP
KEEAKTETEFPDEDEETRLYRLKIEEQKRLREEILKQKELRRQQQAGARKKELLERLAQQQQQLYAPPPP
AEQEEQALSPSPTNGNPLLPFPGAQVRQNVKNRLLVKNQDVSISNVQPKTSNFVPSSANMQYQGQQMKAL
KHLRQTRTVPQSQTQPLHKVLPIKPADVEEPAVPQTPRVASIQGRPQDTKPGVKRTVTHRTNSGGGDGPH
ISSKVRVIKLSGGGGESDGFFHPEGQPQRLPQPPEVGPQPARKVTLTRGGLQQPPHLPAGPHAHSPVPPG
IKSIQGIHPAKKAIMHGRGRGVAGPMGRGRLMPNKQNLRVVECKPQPCVVSVEGLSSSTTDAQLKSLLMS
VGPIQSLQMLPQQRKAIAKFKEPAHALAFQQKFHRHMIDLSHINVALIVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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