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Report for CCDS17669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17669.1 Public Mus musculus 3 Hsd3b6 23 108 98 CCDS HistoryNCBI Gene:15497Re-query CCDS DB by CCDS ID:17669.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029463.12 ENSMUSP00000029463.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029463.12Link to Ensembl Protein Viewer:ENSMUSP00000029463.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029463Re-query CCDS DB by Protein ID:ENSMUSP00000029463
Original member Current member EBI ENSMUST00000170847.1 ENSMUSP00000129911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170847.1Link to Ensembl Protein Viewer:ENSMUSP00000129911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170847Re-query CCDS DB by Protein ID:ENSMUSP00000129911
Original member Current member NCBI NM_013821.3 NP_038849.2 Accepted alive Link to Nucleotide Sequence:NM_013821.3Link to Protein Sequence:NP_038849.2Re-query CCDS DB by Nucleotide ID:NM_013821Re-query CCDS DB by Protein ID:NP_038849Link to BLAST:NP_038849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038849.2 373 O35469 373 100% 0 0

Chromosomal Locations for CCDS 17669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98805860 98806671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98807765 98807929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98810902 98811046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCCTGGGTGGAGCTGCCTGGTAACTGGAGCAGGAGGGTTTTTGGGCCAGAGGATTGTCCAGTTGTTGA
TGCAGGAGAAAGATCTGGAGGAGATCAGGGTCCTGGACAAGTTCTTCAGACCAGAAACCAGGGAGCAATT
CTTCAACCTAGATACAAACATCAAGGTGACAGTGTTGGAAGGAGACATTCTTGACACCCAGTACCTGAGG
AAAGCCTGCCAGGGCATCTCTGTTGTTATCCACACTGCAGCTGTCATTGATGTCACAGGTGTCATTCCCA
GGCAGACCATCCTAGATGTCAATCTGAAAGGTACCCAGAACTTATTGGAGGCCTGTATCCAAGCCAGTGT
TCCAGCCTTCATCTTCTCCAGCTCAGTTGATGTTGCAGGGCCCAACTCATACAAGGAGATAATCCTGAAT
GGCAACGAGGAAGAGCATCATGAAAGCATATGGTCTGATCCATACCCATACAGCAAAAAGATGGCTGAGA
AGGCAGTGCTGGCAGCCAATGGGAGCATGCTGAAAATTGGTGGCACTTTGCATACTTGTGCATTAAGGCC
CATGTATATTTATGGGGAGAGAAGTCCATTCATTTCTAACACAATAATTACGGCCCTCAAAAATAAGAAT
ATTCTCGGTTGTACGGGCAAATTCTCCACAGCCAACCCAGTATATGTGGGTAATGTAGCCTGGGCACACA
TTCTGGCTGCCAGGGGCCTTCGAGACCCCAAAAAGTCACCAAATATCCAAGGAGAGTTCTACTACATCTC
AGATGACACCCCTCACCAAAGCTATGATGATTTAAATTACACCCTGAGCAAGGAGTGGGGCTTCTGCCCT
GATTCCAGCTGGAGCCTTCCTGTGCCCCTACTGTACTGGCTTGCATTCATGCTGGAAACTGTGAGCTTCC
TGCTGAGTCCAATCTACAGATTTATACCTCCCTTTAACCGCCACTTGGTCACACTGACAGGTAGCACGTT
CACTTTCTCCTACAAGAAAGCTCAGCGAGATCTGGGCTATGAGCCACTTGTCAGCTGGGAGGAAGCCAAG
CAGAAAACCTCAGAGTGGATCGGGACACTAGTGGAGCAGCACAGGGAGACACTGGACACAAAGTCTCAGT
GA

Translation (373 aa):
MPGWSCLVTGAGGFLGQRIVQLLMQEKDLEEIRVLDKFFRPETREQFFNLDTNIKVTVLEGDILDTQYLR
KACQGISVVIHTAAVIDVTGVIPRQTILDVNLKGTQNLLEACIQASVPAFIFSSSVDVAGPNSYKEIILN
GNEEEHHESIWSDPYPYSKKMAEKAVLAANGSMLKIGGTLHTCALRPMYIYGERSPFISNTIITALKNKN
ILGCTGKFSTANPVYVGNVAWAHILAARGLRDPKKSPNIQGEFYYISDDTPHQSYDDLNYTLSKEWGFCP
DSSWSLPVPLLYWLAFMLETVSFLLSPIYRFIPPFNRHLVTLTGSTFTFSYKKAQRDLGYEPLVSWEEAK
QKTSEWIGTLVEQHRETLDTKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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