NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4073.1 Public Homo sapiens 5 ARSK 24 110 108 CCDS HistoryNCBI Gene:153642Re-query CCDS DB by CCDS ID:4073.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380009.9 ENSP00000369346.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380009.9Link to Ensembl Protein Viewer:ENSP00000369346.4Re-query CCDS DB by Nucleotide ID:ENST00000380009Re-query CCDS DB by Protein ID:ENSP00000369346
Original member Current member NCBI NM_198150.3 NP_937793.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198150.3Link to Protein Sequence:NP_937793.1Re-query CCDS DB by Nucleotide ID:NM_198150Re-query CCDS DB by Protein ID:NP_937793Link to BLAST:NP_937793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937793.1 536 Q6UWY0 536 100% 0 0

Chromosomal Locations for CCDS 4073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95555279 95555404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95565998 95566127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95567890 95568049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95582916 95583198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95586562 95586733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95591401 95591625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95600847 95601071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95603237 95603526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGCTACTGCTGTGGGTGTCGGTGGTCGCAGCCTTGGCGCTGGCGGTACTGGCCCCCGGAGCAGGGGAGC
AGAGGCGGAGAGCAGCCAAAGCGCCCAATGTGGTGCTGGTCGTGAGCGACTCCTTCGATGGAAGGTTAAC
ATTTCATCCAGGAAGTCAGGTAGTGAAACTTCCTTTTATCAACTTTATGAAGACACGTGGGACTTCCTTT
CTGAATGCCTACACAAACTCTCCAATTTGTTGCCCATCACGCGCAGCAATGTGGAGTGGCCTCTTCACTC
ACTTAACAGAATCTTGGAATAATTTTAAGGGTCTAGATCCAAATTATACAACATGGATGGATGTCATGGA
GAGGCATGGCTACCGAACACAGAAATTTGGGAAACTGGACTATACTTCAGGACATCACTCCATTAGTAAT
CGTGTGGAAGCGTGGACAAGAGATGTTGCTTTCTTACTCAGACAAGAAGGCAGGCCCATGGTTAATCTTA
TCCGTAACAGGACTAAAGTCAGAGTGATGGAAAGGGATTGGCAGAATACAGACAAAGCAGTAAACTGGTT
AAGAAAGGAAGCAATTAATTACACTGAACCATTTGTTATTTACTTGGGATTAAATTTACCACACCCTTAC
CCTTCACCATCTTCTGGAGAAAATTTTGGATCTTCAACATTTCACACATCTCTTTATTGGCTTGAAAAAG
TGTCTCATGATGCCATCAAAATCCCAAAGTGGTCACCTTTGTCAGAAATGCACCCTGTAGATTATTACTC
TTCTTATACAAAAAACTGCACTGGAAGATTTACAAAAAAAGAAATTAAGAATATTAGAGCATTTTATTAT
GCTATGTGTGCTGAGACAGATGCCATGCTTGGTGAAATTATTTTGGCCCTTCATCAATTAGATCTTCTTC
AGAAAACTATTGTCATATACTCCTCAGACCATGGAGAGCTGGCCATGGAACATCGACAGTTTTATAAAAT
GAGCATGTACGAGGCTAGTGCACATGTTCCGCTTTTGATGATGGGACCAGGAATTAAAGCCGGCCTACAA
GTATCAAATGTGGTTTCTCTTGTGGATATTTACCCTACCATGCTTGATATTGCTGGAATTCCTCTGCCTC
AGAACCTGAGTGGATACTCTTTGTTGCCGTTATCATCAGAAACATTTAAGAATGAACATAAAGTCAAAAA
CCTGCATCCACCCTGGATTCTGAGTGAATTCCATGGATGTAATGTGAATGCCTCCACCTACATGCTTCGA
ACTAACCACTGGAAATATATAGCCTATTCGGATGGTGCATCAATATTGCCTCAACTCTTTGATCTTTCCT
CGGATCCAGATGAATTAACAAATGTTGCTGTAAAATTTCCAGAAATTACTTATTCTTTGGATCAGAAGCT
TCATTCCATTATAAACTACCCTAAAGTTTCTGCTTCTGTCCACCAGTATAATAAAGAGCAGTTTATCAAG
TGGAAACAAAGTATAGGACAGAATTATTCAAACGTTATAGCAAATCTTAGGTGGCACCAAGACTGGCAGA
AGGAACCAAGGAAGTATGAAAATGCAATTGATCAGTGGCTTAAAACCCATATGAATCCAAGAGCAGTTTG
A

Translation (536 aa):
MLLLWVSVVAALALAVLAPGAGEQRRRAAKAPNVVLVVSDSFDGRLTFHPGSQVVKLPFINFMKTRGTSF
LNAYTNSPICCPSRAAMWSGLFTHLTESWNNFKGLDPNYTTWMDVMERHGYRTQKFGKLDYTSGHHSISN
RVEAWTRDVAFLLRQEGRPMVNLIRNRTKVRVMERDWQNTDKAVNWLRKEAINYTEPFVIYLGLNLPHPY
PSPSSGENFGSSTFHTSLYWLEKVSHDAIKIPKWSPLSEMHPVDYYSSYTKNCTGRFTKKEIKNIRAFYY
AMCAETDAMLGEIILALHQLDLLQKTIVIYSSDHGELAMEHRQFYKMSMYEASAHVPLLMMGPGIKAGLQ
VSNVVSLVDIYPTMLDIAGIPLPQNLSGYSLLPLSSETFKNEHKVKNLHPPWILSEFHGCNVNASTYMLR
TNHWKYIAYSDGASILPQLFDLSSDPDELTNVAVKFPEITYSLDQKLHSIINYPKVSASVHQYNKEQFIK
WKQSIGQNYSNVIANLRWHQDWQKEPRKYENAIDQWLKTHMNPRAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH