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Report for CCDS26706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26706.1 Public Mus musculus 13 Hmgcr 23 108 98 CCDS HistoryNCBI Gene:15357Re-query CCDS DB by CCDS ID:26706.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022176.14 ENSMUSP00000022176.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022176.14Link to Ensembl Protein Viewer:ENSMUSP00000022176.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022176Re-query CCDS DB by Protein ID:ENSMUSP00000022176
Original member Current member NCBI NM_001360165.1 NP_001347094.1 Accepted alive Link to Nucleotide Sequence:NM_001360165.1Link to Protein Sequence:NP_001347094.1Re-query CCDS DB by Nucleotide ID:NM_001360165Re-query CCDS DB by Protein ID:NP_001347094Link to BLAST:NP_001347094.1
Original member Current member NCBI NM_008255.2 NP_032281.2 Accepted alive Link to Nucleotide Sequence:NM_008255.2Link to Protein Sequence:NP_032281.2Re-query CCDS DB by Nucleotide ID:NM_008255Re-query CCDS DB by Protein ID:NP_032281Link to BLAST:NP_032281.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347094.1 887 Q01237 887 100% 0 0
NP_032281.2 887 Q01237 887 100% 0 0

Chromosomal Locations for CCDS 26706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96650579 96650633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96651010 96651164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96651856 96652014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96652096 96652236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96652658 96652828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96654816 96654921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96655550 96655707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96655854 96656012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96656563 96656757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96658583 96658758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96658871 96659118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96659217 96659377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96659894 96660010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96660118 96660224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96663029 96663134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96664762 96664846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96665810 96665897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96666113 96666224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96666521 96666685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGTTGTCAAGACTTTTCCGGATGCATGGCCTCTTCGTGGCCTCCCACCCCTGGGAAGTTATTGTGGGAA
CAGTGACACTTACAATCTGTATGATGTCCATGAACATGTTCACCGGCAACAACAAGATCTGTGGCTGGAA
TTATGAGTGCCCTAAATTTGAAGAGGACGTGCTGAGCAGCGACATCATCATCCTGACGATAACGCGGTGC
ATCGCCATCCTGTACATTTACTTCCAGTTCCAGAACCTACGGCAGCTTGGGTCCAAGTACATTCTGGGTA
TTGCTGGCCTCTTCACAATTTTCTCAAGCTTTGTCTTCAGTACAGTCGTCATTCATTTCCTCGACAAAGA
ACTGACAGGCTTAAATGAAGCTTTGCCCTTTTTTCTGCTCTTGATTGACCTTTCTAGAGCGAGTGCATTA
GCAAAGTTTGCCCTCAGTTCAAATTCACAGGATGAAGTAAGGGAAAATATAGCTCGTGGAATGGCAATCC
TGGGCCCCACATTCACTCTTGACGCTCTTGTGGAATGCCTTGTGATTGGAGTTGGCACCATGTCAGGCGT
CCGCCAGCTGGAGATCATGTGCTGCTTCGGCTGCATGTCAGTGTTGGCCAACTACTTTGTGTTCATGACA
TTCTTCCCGGCCTGTGTGTCGCTGGTCCTAGAGCTTTCTCGTGAAAGCCGTGAGGGTCGTCCAATTTGGC
AGCTCAGCCATTTTGCCAGAGTTTTAGAAGAAGAAGAAAATAAACCAAACCCCGTAACCCAAAGGGTCAA
GATGATTATGTCTTTAGGCTTGGTCCTTGTTCACGCTCATAGTCGCTGGATAGCTGATCCTTCTCCTCAG
AACAGCACAGCGGAGCAGGCTAAGGTTTCCTTGGGTCTGGACGAAGATGTGTCCAAGAGAATTGAACCAA
GTGTTTCTCTCTGGCAGTTTTATCTCTCCAAGATGATCAGCATGGACATTGAGCAAGTGATTACCCTGAG
TTTAGCCTTCCTTTTGGCTGTCAAGTATATTTTCTTTGAACAAGCAGAGACAGAATCGACACTGTCATTA
AAAAATCCTATCACGTCTCCCGTCGTGACCTCAAAGAAAGCTCAAGACAACTGTTGTAGACGTGAGCCTC
TGCTTGTGAGAAGGAACCAGAAGCTTTCGTCAGTAGAGGAGGATCCAGGAGCGAACCAAGAGAGAAAAGT
TGAGGTTATAAAACCATTAGTGGTGGAAGCAGAGACTACAAGCAGAGCTACGTTTGTGCTTGGGGCTTCT
GTAGCCAGCCCTCCATCCGCCCTGGGGACACAGGAGCCTGGAATTGAACTCCCCATCGAGCCACGACCTA
ATGAAGAATGTCTGCAGATACTGGAGAATGCAGAGAAAGGTGCAAAGTTCCTTAGTGATGCAGAGATCAT
CCAGTTGGTCAATGCCAAGCATATCCCAGCTTACAAATTGGAAACTCTAATGGAAACTCATGAACGTGGT
GTGTCTATTCGCCGGCAGCTCCTCTCCACAAAGCTTGCAGAGCCGTCCTCTCTACAGTACCTGCCTTACA
GAGATTATAATTATTCCTTGGTGATGGGAGCTTGCTGTGAGAATGTGATCGGATATATGCCCATCCCTGT
TGGAGTGGCAGGGCCTCTGTGCCTGGATGGGAAGGAGTACCAGGTGCCGATGGCAACGACGGAAGGCTGT
CTTGTGGCCAGCACTAACAGAGGCTGCAGAGCCATAAGCCTTGGTGGAGGTGCCAGCAGCCGGGTCCTTG
CAGATGGGATGACTCGAGGCCCAGTGGTGCGTCTTCCACGTGCTTGTGACTCTGCAGAAGTAAAGACCTG
GCTTGAAACACCTGAAGGGTTTGCAGTGATAAAGGAGGCCTTTGATAGCACCAGCAGATTTGCTCGTCTA
CAGAAACTCCACGTGACGATGGCAGGACGCAACCTCTATATCCGTTTCCAGTCCAGGACGGGGGACGCCA
TGGGCATGAACATGATCTCTAAGGGTACGGAGAAAGCACTGCTGAAGCTTCAGGAGTTCTTTCCTGACAT
GCAGATTCTGGCAGTCAGTGGGAACTATTGCACCGACAAGAAGCCTGCTGCCATAAATTGGATCGAAGGA
CGAGGAAAGACTGTGGTTTGTGAAGCCGTCATTCCAGCCAAGGTGGTGAGAGAGGTGTTAAAGACAACTA
CGGAAGCTATGGTTGACGTAAACATTAACAAGAATCTTGTGGGCTCGGCCATGGCTGGGAGCATAGGCGG
CTACAACGCCCACGCAGCAAACATTGTCACTGCTATCTACATCGCATGTGGCCAGGATGCAGCACAGAAT
GTGGGGAGTTCAAACTGTATTACTTTAATGGAAGCCAGTGGTCCCACAAATGAAGACTTATATATCAGCT
GCACCATGCCATCGATAGAGATAGGAACCGTGGGTGGTGGGACCAACCTTCTACCTCAGCAAGCCTGCCT
GCAGATGCTAGGTGTTCAAGGAGCATGCAAAGACAATCCTGGAGAAAACGCACGGCAGCTTGCCCGAATT
GTATGTGGCACTGTGATGGCTGGTGAGCTGTCCTTGATGGCAGCCTTGGCAGCAGGACATCTTGTCAGAA
GTCACATGGTTCACAACAGATCAAAGATAAATTTACAAGATCTTCAAGGAACGTGCACCAAGAAGGCAGC
TTGA

Translation (887 aa):
MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMSMNMFTGNNKICGWNYECPKFEEDVLSSDIIILTITRC
IAILYIYFQFQNLRQLGSKYILGIAGLFTIFSSFVFSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL
AKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMT
FFPACVSLVLELSRESREGRPIWQLSHFARVLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQ
NSTAEQAKVSLGLDEDVSKRIEPSVSLWQFYLSKMISMDIEQVITLSLAFLLAVKYIFFEQAETESTLSL
KNPITSPVVTSKKAQDNCCRREPLLVRRNQKLSSVEEDPGANQERKVEVIKPLVVEAETTSRATFVLGAS
VASPPSALGTQEPGIELPIEPRPNEECLQILENAEKGAKFLSDAEIIQLVNAKHIPAYKLETLMETHERG
VSIRRQLLSTKLAEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDGKEYQVPMATTEGC
LVASTNRGCRAISLGGGASSRVLADGMTRGPVVRLPRACDSAEVKTWLETPEGFAVIKEAFDSTSRFARL
QKLHVTMAGRNLYIRFQSRTGDAMGMNMISKGTEKALLKLQEFFPDMQILAVSGNYCTDKKPAAINWIEG
RGKTVVCEAVIPAKVVREVLKTTTEAMVDVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQN
VGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARI
VCGTVMAGELSLMAALAAGHLVRSHMVHNRSKINLQDLQGTCTKKAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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