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Report for CCDS27143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27143.1 Public Mus musculus 14 Gzme 23 108 98 CCDS HistoryNCBI Gene:14942Re-query CCDS DB by CCDS ID:27143.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089549.7 ENSMUSP00000086978.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089549.7Link to Ensembl Protein Viewer:ENSMUSP00000086978.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000089549Re-query CCDS DB by Protein ID:ENSMUSP00000086978
Original member Current member NCBI NM_010373.3 NP_034503.2 Accepted alive Link to Nucleotide Sequence:NM_010373.3Link to Protein Sequence:NP_034503.2Re-query CCDS DB by Nucleotide ID:NM_010373Re-query CCDS DB by Protein ID:NP_034503Link to BLAST:NP_034503.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034503.2 248 P08884 248 100% 0 0

Chromosomal Locations for CCDS 27143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56117726 56117869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56118251 56118511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56118698 56118833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56119298 56119448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56120502 56120556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGCCACCAGTCCTGATTCTCCTGACCCTACTTCTGCCTCTTGGAGCTGGAGCAGAGGAGATCATCGGCG
GCCATGTGGTGAAGCCACACTCCCGCCCCTACATGGCGTTTGTTAAGTCTGTGGATATTGAAGGTAATAG
GAGATACTGTGGAGGCTTCTTGGTTCAAGATGACTTTGTGCTGACTGCTGCTCACTGCAGGAACAGGACA
ATGACAGTCACACTGGGGGCCCACAACATCAAGGCTAAGGAGGAGACACAGCAGATCATCCCTGTGGCAA
AAGCCATTCCCCATCCAGATTATAATGCCACTGCCTTCTTCAGTGACATCATGCTGTTAAAGCTGGAGAG
TAAGGCCAAGAGAACTAAAGCTGTGAGACCCCTCAAGTTGCCCAGACCCAATGCCCGGGTGAAGCCAGGG
GATGTGTGCAGTGTGGCTGGCTGGGGGTCAAGGTCCATCAATGACACTAAAGCATCTGCCCGCCTGCGAG
AGGCTCAACTGGTCATCCAGGAGGATGAGGAATGCAAAAAACGTTTCCGACACTACACTGAGACCACAGA
GATTTGTGCTGGAGACTTGAAGAAAATAAAGACTCCTTTCAAGGGTGACTCTGGGGGACCCCTCGTGTGT
GACAACAAAGCTTATGGACTTTTAGCCTATGCAAAAAACAGGACAATCTCTTCAGGAGTCTTCACTAAGA
TTGTGCACTTCCTGCCGTGGATAAGCAGGAACATGAAGCTGCTCTAA

Translation (248 aa):
MPPVLILLTLLLPLGAGAEEIIGGHVVKPHSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRNRT
MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNATAFFSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPG
DVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKRFRHYTETTEICAGDLKKIKTPFKGDSGGPLVC
DNKAYGLLAYAKNRTISSGVFTKIVHFLPWISRNMKLL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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