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Report for CCDS540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
540.1 Public Homo sapiens 1 MOB3C 24 110 108 CCDS HistoryNCBI Gene:148932Re-query CCDS DB by CCDS ID:540.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271139.13 ENSP00000271139.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000271139.13Link to Ensembl Protein Viewer:ENSP00000271139.9Re-query CCDS DB by Nucleotide ID:ENST00000271139Re-query CCDS DB by Protein ID:ENSP00000271139
Original member Current member EBI ENST00000319928.9 ENSP00000315113.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319928.9Link to Ensembl Protein Viewer:ENSP00000315113.3Re-query CCDS DB by Nucleotide ID:ENST00000319928Re-query CCDS DB by Protein ID:ENSP00000315113
Original member Current member EBI ENST00000371940.1 ENSP00000361008.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371940.1Link to Ensembl Protein Viewer:ENSP00000361008.2Re-query CCDS DB by Nucleotide ID:ENST00000371940Re-query CCDS DB by Protein ID:ENSP00000361008
Original member Current member NCBI NM_145279.5 NP_660322.3 Accepted alive Link to Nucleotide Sequence:NM_145279.5Link to Protein Sequence:NP_660322.3Re-query CCDS DB by Nucleotide ID:NM_145279Re-query CCDS DB by Protein ID:NP_660322Link to BLAST:NP_660322.3
Original member Current member NCBI NM_201403.3 NP_958805.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_201403.3Link to Protein Sequence:NP_958805.1Re-query CCDS DB by Nucleotide ID:NM_201403Re-query CCDS DB by Protein ID:NP_958805Link to BLAST:NP_958805.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660322.3 216 Q70IA8 216 100% 0 0
NP_958805.1 216 Q70IA8 216 100% 0 0

Chromosomal Locations for CCDS 540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46609655 46609684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46610002 46610204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46612904 46613321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGCCCTGTGCCTGAAGCAGGTGTTCGCCAAGGACAAGACGTTCCGGCCGCGGAAGCGCTTTGAGCCGG
GCACACAGCGCTTTGAGCTGTACAAGAAGGCACAGGCCTCTCTCAAGTCGGGCCTGGACCTGCGCAGTGT
GGTGAGGCTACCACCCGGGGAGAACATCGACGACTGGATCGCCGTGCACGTGGTGGACTTCTTCAACCGC
ATCAACCTCATCTACGGCACTATGGCGGAGCGCTGCAGTGAGACCAGCTGCCCGGTCATGGCCGGCGGGC
CCCGCTACGAGTACCGCTGGCAGGACGAGCGCCAGTACCGGCGGCCCGCCAAGCTCTCTGCGCCGCGCTA
TATGGCATTGCTCATGGACTGGATCGAAGGCCTCATCAACGACGAAGAGGTCTTTCCCACGCGTGTTGGA
GTTCCCTTCCCTAAGAACTTCCAGCAGGTCTGCACCAAGATCCTGACCCGCCTCTTCCGAGTCTTTGTCC
ATGTCTACATCCACCACTTCGATAGCATCCTCAGCATGGGGGCAGAGGCGCACGTCAACACCTGCTACAA
GCACTTCTACTACTTCATCCGCGAGTTCAGTCTGGTGGACCAGCGGGAGCTGGAGCCACTGAGGGAGATG
ACAGAGCGGATCTGCCACTGA

Translation (216 aa):
MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNR
INLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEEVFPTRVG
VPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREM
TERICH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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