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Report for CCDS50.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50.1 Public Homo sapiens 1 CCDC27 24 110 108 CCDS HistoryNCBI Gene:148870Re-query CCDS DB by CCDS ID:50.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294600.7 ENSP00000294600.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294600.7Link to Ensembl Protein Viewer:ENSP00000294600.2Re-query CCDS DB by Nucleotide ID:ENST00000294600Re-query CCDS DB by Protein ID:ENSP00000294600
Original member Current member NCBI NM_152492.3 NP_689705.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152492.3Link to Protein Sequence:NP_689705.2Re-query CCDS DB by Nucleotide ID:NM_152492Re-query CCDS DB by Protein ID:NP_689705Link to BLAST:NP_689705.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689705.2 656 Q2M243 656 100% 0 0

Chromosomal Locations for CCDS 50.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3752482 3752799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3754118 3754241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3755457 3755567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3756733 3756890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3761281 3761430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3762620 3762712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3763108 3763474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3763706 3763836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3766535 3766612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3767233 3767445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3769783 3769887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3771401 3771523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGTTCGAGGCCATCTTCCCCTCCACACCCCAAGCCAGGCTGAAGAGAGATCCACGGGAAAAGCCGGGCC
TGTCCTCATTCAGGTCCACATTCAGGCAACAAAGCTCACTTGGTCTTTGCATCCCACGCCTCATGTTACC
TAAGGAGGCCAGCCCATCTCAGAGGCACAGTTCGATGTCCAGCTCGATGGCCAGGGCCCTGGTGCTCCTC
CAGAGCATGGCCAGCCGGGACGCCCGGTGCCCAGAATGGAAACCGCACCAAAAGCCACGCACGCTCAGCA
AGTCGGTCCAGACCATCAGCCGCTACTACAGGAAGACGAGTGAACCCAAGGATGCCGCCAGCCTCACCGG
CTTCATGTCCAAAATGGAACTTCGAAGGGTCTTCCCCACGCATCCTGACTGCCCCCAGTTCAGCACCAGG
GCCACATCCATGTCCCACTGTGGTTCACCCACTGAGGCCGATTTGTCCGGAGAGATTGACAACAGCTCGG
AGACCTGGAGAGGCACCCAGGACCTGTTCTTGGCCAGGCGGGGCTCAGACACGAACGTGGACGGGTACCT
CCTTCCCTTCAGTAAGAGCATCTGCGAGTTCGATTACTTGCGGAAGAGGAGAAAATCCCAGACTTTGAGT
CCGGTCACCAGCAGCTCAGTCGCATCTCAGAGCTGCCTGAGAAAGAGGATGCCCTGGTACCTCTCAGTCA
TCCACGAGAAGGATCACTGCCTGTCTGAGCTGGAGATACAGGTTCAGAAGAAAGACGAGGAGATCCTGCT
GCTCCAGGAGGAGAGGGAGGCCCTGAAGATGCAGCTGAAATGCCTTCTGAAAGGCAAAGGCCAAGAGACA
TCCATGTCCCCAGGCAGGAGGGAGCAGCTCTCAGACGCTTCGCTGAAGCTGGGCAGGCTGAGCCTCCTGA
AGGCCTTCTCCAGACATGAGGAGGAGCTGCAGCACTGGTGGCAGATGCAGGAGGAGTCTGCGGCACCGGA
GAGGGGCAAGGAGCCCGACCTGGGAGGTGGCGAGGAGGACGAGGGCCTGGAAGGGGAGCCCGATGGGGTG
GAGGACACGGGTGCCTGGGGAGGTGTGAGCCAGATGGGATCCGTGCATGAGGAGGGAAGCGAGGAGGAGG
AAGAGGAGGAAGGGGACAGGGATGAGGACTCAGAGGAAAGGGAGCTGCCGGAGGAAGAGGAGATCCCCAG
GAGAAGGGCCTCCTCCCTGGCCGAGTCGTTTGAGGAGGAGCTGCTGGCCCAGCTGGAGGAGTACGAGCAG
GTCATCCTGGACTTCCAGTTCAACCTGGAGGCCACCAGGACCAGATACTCCCTTGCAACAGGAGTGATTG
CGTCTTTACAACAACAAGTGGATTTCCAAGAAACCCAGCTGCGAAAGATCAATACGGAAAATGAGACGCT
GCAGAAGGAGCTCCGAGAGCGGAGGCAGCAGCTACAAGCCATGACCGACAAGTTCTCCAACCTCCGAGAA
GATAAGAAACACCAAGAGATGATGGGGCTCATTGAAAAGGACAACCAGCTCCTCCGACAGCAAGTGTCGG
AACTGGAGAGAAAGCTCACCAAGCGGGACTGTGTCATCTCAGAGTTGGACACCAAGGTCAGCCAGCTGCA
GGAGCAGGTGGAACTGGACCAGAACCACCTGCAGAGGTGGAAGCAGCTGCAGGAGGATTTGCAGAGCAAG
AAGGAGATGATTCAGCAGGCAGAGCAGCACACCCGCGTGGCCCTGGAGAGCTCCCAGTCCAGGCTCGAGA
GGTTAAGGAATAAGATCATCCAGGCCACCTTTAGCATCTCCGGGACCAAGTCCTTGGCCAACGAGATCTC
TGACAATGACATCCTGGAAGCCCTGCAGAGAATTATCTCAGAGAGAAGCGACTACTATAATCAGCTGAAG
CAGAAAGGCGTCAAAGTGCCCCCCCTGCAACAGTCAGAGGCCTTCCTGACCAGCAAATCCAAGAAGGGGA
CCTCCAAGTAG

Translation (656 aa):
MFEAIFPSTPQARLKRDPREKPGLSSFRSTFRQQSSLGLCIPRLMLPKEASPSQRHSSMSSSMARALVLL
QSMASRDARCPEWKPHQKPRTLSKSVQTISRYYRKTSEPKDAASLTGFMSKMELRRVFPTHPDCPQFSTR
ATSMSHCGSPTEADLSGEIDNSSETWRGTQDLFLARRGSDTNVDGYLLPFSKSICEFDYLRKRRKSQTLS
PVTSSSVASQSCLRKRMPWYLSVIHEKDHCLSELEIQVQKKDEEILLLQEEREALKMQLKCLLKGKGQET
SMSPGRREQLSDASLKLGRLSLLKAFSRHEEELQHWWQMQEESAAPERGKEPDLGGGEEDEGLEGEPDGV
EDTGAWGGVSQMGSVHEEGSEEEEEEEGDRDEDSEERELPEEEEIPRRRASSLAESFEEELLAQLEEYEQ
VILDFQFNLEATRTRYSLATGVIASLQQQVDFQETQLRKINTENETLQKELRERRQQLQAMTDKFSNLRE
DKKHQEMMGLIEKDNQLLRQQVSELERKLTKRDCVISELDTKVSQLQEQVELDQNHLQRWKQLQEDLQSK
KEMIQQAEQHTRVALESSQSRLERLRNKIIQATFSISGTKSLANEISDNDILEALQRIISERSDYYNQLK
QKGVKVPPLQQSEAFLTSKSKKGTSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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