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Report for CCDS12943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12943.1 Public Homo sapiens 19 ZNF583 24 110 108 CCDS HistoryNCBI Gene:147949Re-query CCDS DB by CCDS ID:12943.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291598.11 ENSP00000291598.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000291598.11Link to Ensembl Protein Viewer:ENSP00000291598.7Re-query CCDS DB by Nucleotide ID:ENST00000291598Re-query CCDS DB by Protein ID:ENSP00000291598
Original member Current member EBI ENST00000333201.13 ENSP00000388502.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333201.13Link to Ensembl Protein Viewer:ENSP00000388502.2Re-query CCDS DB by Nucleotide ID:ENST00000333201Re-query CCDS DB by Protein ID:ENSP00000388502
Original member Current member NCBI NM_001159860.2 NP_001153332.1 Accepted alive Link to Nucleotide Sequence:NM_001159860.2Link to Protein Sequence:NP_001153332.1Re-query CCDS DB by Nucleotide ID:NM_001159860Re-query CCDS DB by Protein ID:NP_001153332Link to BLAST:NP_001153332.1
Original member Current member NCBI NM_001159861.2 NP_001153333.1 Accepted alive Link to Nucleotide Sequence:NM_001159861.2Link to Protein Sequence:NP_001153333.1Re-query CCDS DB by Nucleotide ID:NM_001159861Re-query CCDS DB by Protein ID:NP_001153333Link to BLAST:NP_001153333.1
Original member Current member NCBI NM_152478.3 NP_689691.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152478.3Link to Protein Sequence:NP_689691.2Re-query CCDS DB by Nucleotide ID:NM_152478Re-query CCDS DB by Protein ID:NP_689691Link to BLAST:NP_689691.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153332.1 569 Q96ND8 569 100% 0 0
NP_001153333.1 569 Q96ND8 569 100% 0 0
NP_689691.2 569 Q96ND8 569 100% 0 0

Chromosomal Locations for CCDS 12943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56407115 56407123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56413959 56414085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56414345 56414440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56422891 56424368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGTCCAAGGATTTGGTGACATTTGGGGATGTGGCTGTAAATTTCTCTCAAGAGGAATGGGAATGGCTGA
ACCCTGCTCAGAGGAATTTGTACAGGAAAGTGATGTTGGAGAACTACAGGAGCTTGGTATCATTGGGAGT
TTCTGTTTCTAAGCCAGATGTGATCTCATTATTGGAGCAAGGAAAAGAGCCCTGGATGGTGAAGAAGGAG
GGAACAAGAGGCCCATGCCCTGATTGGGAGTATGTATTTAAAAACAGTGAATTTTCATCAAAGCAAGAGA
CATATGAAGAATCATCCAAAGTTGTGACAGTGGGAGCAAGACATCTTAGTTATAGCCTTGACTATCCCAG
TTTGAGAGAAGACTGTCAAAGTGAGGACTGGTATAAGAACCAGCTGGGAAGTCAAGAGGTACATCTTAGT
CAATTAATCATCACTCATAAAGAAATCCTTCCAGAAGTTCAAAATAAAGAATATAACAAATCTTGGCAAA
CATTCCACCAGGATACAATCTTTGATATACAACAGAGTTTTCCCACCAAAGAAAAAGCACATAAGCATGA
ACCACAAAAGAAAAGTTACCGAAAAAAATCTGTTGAAATGAAACATAGGAAAGTCTATGTAGAAAAGAAA
CTTTTGAAATGTAATGATTGTGAGAAAGTCTTCAACCAGAGCTCATCCCTTACTCTTCATCAGAGAATTC
ATACTGGAGAGAAACCCTATGCATGTGTTGAATGTGGGAAAACGTTCAGCCAGAGTGCAAACTTGGCGCA
ACATAAGAGAATACATACTGGAGAGAAACCCTATGAATGTAAAGAATGTAGGAAAGCCTTCAGCCAGAAT
GCACACCTGGCCCAACATCAGAGAGTTCATACTGGAGAGAAACCTTATCAGTGTAAAGAATGTAAAAAAG
CCTTCAGCCAGATTGCACACCTGACTCAGCATCAGAGAGTTCATACTGGAGAGAGACCTTTCGAATGTAT
TGAATGTGGAAAGGCCTTTAGTAATGGTTCATTTCTTGCTCAGCATCAGAGAATTCATACAGGAGAGAAA
CCTTATGTGTGTAATGTGTGTGGGAAAGCCTTTAGCCATCGTGGATACCTAATTGTACATCAGAGAATTC
ATACTGGAGAGAGACCCTACGAATGTAAGGAATGTAGGAAAGCCTTCAGCCAGTATGCACACCTTGCTCA
ACATCAGAGAGTTCATACTGGAGAAAAACCTTATGAATGTAAAGTATGTAGGAAAGCCTTCAGCCAAATT
GCATACCTTGATCAACATCAGAGGGTTCATACTGGAGAGAAACCCTATGAATGTATTGAATGTGGGAAGG
CCTTTAGCAATAGTTCATCACTTGCACAACATCAGAGAAGTCATACTGGAGAAAAACCCTATATGTGTAA
GGAATGTAGGAAAACATTTAGCCAGAATGCAGGCCTTGCTCAACATCAGAGAATTCATACTGGAGAGAAA
CCTTATGAATGTAATGTTTGTGGGAAAGCATTTAGCTATAGTGGATCTCTTACTCTACATCAGAGAATTC
ATACTGGAGAAAGACCCTATGAATGTAAAGATTGCAGGAAATCTTTCAGGCAGCGTGCACATCTTGCTCA
TCATGAGAGAATTCATACTATGGAGTCATTCTTGACTCTTTCCTCTCCCTCACCCTCCACATCAAATCAG
TTGCCAAGACCTGTAGGTTTCATCTCCTGA

Translation (569 aa):
MSKDLVTFGDVAVNFSQEEWEWLNPAQRNLYRKVMLENYRSLVSLGVSVSKPDVISLLEQGKEPWMVKKE
GTRGPCPDWEYVFKNSEFSSKQETYEESSKVVTVGARHLSYSLDYPSLREDCQSEDWYKNQLGSQEVHLS
QLIITHKEILPEVQNKEYNKSWQTFHQDTIFDIQQSFPTKEKAHKHEPQKKSYRKKSVEMKHRKVYVEKK
LLKCNDCEKVFNQSSSLTLHQRIHTGEKPYACVECGKTFSQSANLAQHKRIHTGEKPYECKECRKAFSQN
AHLAQHQRVHTGEKPYQCKECKKAFSQIAHLTQHQRVHTGERPFECIECGKAFSNGSFLAQHQRIHTGEK
PYVCNVCGKAFSHRGYLIVHQRIHTGERPYECKECRKAFSQYAHLAQHQRVHTGEKPYECKVCRKAFSQI
AYLDQHQRVHTGEKPYECIECGKAFSNSSSLAQHQRSHTGEKPYMCKECRKTFSQNAGLAQHQRIHTGEK
PYECNVCGKAFSYSGSLTLHQRIHTGERPYECKDCRKSFRQRAHLAHHERIHTMESFLTLSSPSPSTSNQ
LPRPVGFIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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