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Report for CCDS29022.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29022.2 Public Mus musculus 17 Foxn2 23 108 98 CCDS HistoryNCBI Gene:14236Re-query CCDS DB by CCDS ID:29022.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 29022.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29022.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112238.8 ENSMUSP00000107857.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112238.8Link to Ensembl Protein Viewer:ENSMUSP00000107857.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112238Re-query CCDS DB by Protein ID:ENSMUSP00000107857
Original member Current member NCBI NM_001355742.1 NP_001342671.1 Accepted alive Link to Nucleotide Sequence:NM_001355742.1Link to Protein Sequence:NP_001342671.1Re-query CCDS DB by Nucleotide ID:NM_001355742Re-query CCDS DB by Protein ID:NP_001342671Link to BLAST:NP_001342671.1
Original member Current member NCBI NM_180974.5 NP_851305.2 Accepted alive Link to Nucleotide Sequence:NM_180974.5Link to Protein Sequence:NP_851305.2Re-query CCDS DB by Nucleotide ID:NM_180974Re-query CCDS DB by Protein ID:NP_851305Link to BLAST:NP_851305.2

Chromosomal Locations for CCDS 29022.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 88462727 88463263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88475856 88475950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88479276 88479340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88484401 88484469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88486403 88486926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGGTCCAGTAATTGGAATGACTCCAGATAAGAGAGCTGAGACCCCGGGAGCTGAGAAGGTTGCAGGAC
TGAGTCAGATTTACAAAATGGGAAGTTTGCCTGAAGCTGGGGATGCTGCCAGGCCAAAGGCCACTCTTGT
GGGCAGTGAGTCAGCAGATGACGAGCTAACAAACTTGAACTGGCTTCATGAGAGCAGTAACCTTCTAACA
AACCTCAGACTTGGAAGTGAAGGCCTTCCCATGGTCAGTCCGCTGTATGACATAGAGGGAGATGAGATGC
CATCCTTTGGACCATCGTGCTACCAGAACCCAGAAAAAAAATCAGCAACTTCAAAGCCCCCGTACTCCTT
TAGTCTTCTCATTTATATGGCTATTGAACACTCGCCAAATAAATGTTTGCCTGTCAAAGAAATTTACAGC
TGGATTCTGGATCGCTTCCCATACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTGTTCGGCATAATC
TATCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGTCATGGCAAGGTTAATGGAAAAGGCTCCTTGTG
GTGCGTTGATCCAGAATATAAGCCCAATCTTATGCAGGCCTTAAAGAAGCAGCCTTTTTCTTCTCCACAA
AGTGCTGCTTTATCACCTCACTGCTTAAGCTCTGCTCTCAAGCAAAGCCAAGTGCAAACTCTCCAAGAAT
CTGACATTGATGCAGCCACTGCAATGATACTTTTAAATACTTCAATAGAACAAGAGATTTTAGAATGTGA
GAAGCCACTGCCTCTTAAAACATCACTGCAGAAGAAGAGGAGTTACGGCAGCGCGTTCAGTGCCCCCGGT
GCTGTGCGACTGCAGGAGAGCCCGTCTCCAACCGCCGGCATCGACCCAAAAGCCGACCATAACTACAGTG
CCAACAGCGTGGCGGCCCAGCGCTGCGCATCCAGGGCGAGCATGTCTTCTCTGTCCTCTGTGGATGAGGT
GTATGAATTCATCCCAAAGAGCAGCCACGGCGGGAGCGACGGTAGCGAAGGCTTCCACAGCGACGAGGAG
ACGGATGCGGAGGACGAGGAGGATCCTCTGGGAGACAGTGGCTACGCACCGCAAGCTCGTGGACACAGTA
CTCTGAAAGGGCAGCCAGGCAAAAAGATCCCAAAACAGTCCTGTCAAGAGATTGATGAGGAGCTCAAAGA
GGCAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCCTTGGTTCCCTGATAAGTACTGCGAAG
GCACAGAGTCAGAAGCACCGGGAAAAGTAG

Translation (429 aa):
MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGDAARPKATLVGSESADDELTNLNWLHESSNLLT
NLRLGSEGLPMVSPLYDIEGDEMPSFGPSCYQNPEKKSATSKPPYSFSLLIYMAIEHSPNKCLPVKEIYS
WILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPEYKPNLMQALKKQPFSSPQ
SAALSPHCLSSALKQSQVQTLQESDIDAATAMILLNTSIEQEILECEKPLPLKTSLQKKRSYGSAFSAPG
AVRLQESPSPTAGIDPKADHNYSANSVAAQRCASRASMSSLSSVDEVYEFIPKSSHGGSDGSEGFHSDEE
TDAEDEEDPLGDSGYAPQARGHSTLKGQPGKKIPKQSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAK
AQSQKHREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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