NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37528.1 Public Mus musculus 17 Fkbp5 23 108 98 CCDS HistoryNCBI Gene:14229Re-query CCDS DB by CCDS ID:37528.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079413.10 ENSMUSP00000078382.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079413.10Link to Ensembl Protein Viewer:ENSMUSP00000078382.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079413Re-query CCDS DB by Protein ID:ENSMUSP00000078382
Original member Current member EBI ENSMUST00000114792.7 ENSMUSP00000110440.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114792.7Link to Ensembl Protein Viewer:ENSMUSP00000110440.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114792Re-query CCDS DB by Protein ID:ENSMUSP00000110440
Original member Current member EBI ENSMUST00000177939.7 ENSMUSP00000136245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177939.7Link to Ensembl Protein Viewer:ENSMUSP00000136245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177939Re-query CCDS DB by Protein ID:ENSMUSP00000136245
Original member Current member EBI ENSMUST00000233102.1 ENSMUSP00000156418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233102.1Link to Ensembl Protein Viewer:ENSMUSP00000156418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233102Re-query CCDS DB by Protein ID:ENSMUSP00000156418
Original member Current member NCBI NM_010220.4 NP_034350.1 Accepted alive Link to Nucleotide Sequence:NM_010220.4Link to Protein Sequence:NP_034350.1Re-query CCDS DB by Nucleotide ID:NM_010220Re-query CCDS DB by Protein ID:NP_034350Link to BLAST:NP_034350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034350.1 456 Q64378 456 100% 0 0

Chromosomal Locations for CCDS 37528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28401047 28401151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28402609 28402848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28406085 28406270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28410510 28410593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28412034 28412124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28415869 28416025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28428352 28428466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28429221 28429363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28437992 28438136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28440928 28441032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGACTACTGATGAGGGCACCAGTAACAATGGAGAGAACCCAGCAGCCACCATGACTGAGCAGGGTGAAG
ATATCACTACGAAGAAAGACAGAGGAGTATTAAAGATTGTCAAAAGAGTGGGGACTAGTGACGAGGCCCC
AATGTTTGGTGACAAAGTTTATGTCCACTACAAAGGGATGTTGTCAGATGGAAAGAAGTTTGATTCCAGT
CATGACAGAAAGAAGCCATTTGCCTTTAGCCTTGGCCAAGGCCAGGTTATCAAAGCCTGGGACATTGGGG
TGTCTACTATGAAGAAAGGCGAGATCTGCCATTTATTATGTAAACCAGAATATGCTTATGGCTCGGCTGG
CCACCTCCAAAAAATTCCATCAAATGCAACTCTCTTTTTTGAGATTGAGCTCCTTGATTTCAAAGGTGAG
GATTTATTTGAAGATTCAGGCGTTATCCGTAGAATCAAACGGAAAGGCGAGGGATACTCAAACCCAAACG
AAGGAGCAACGGTAAAAGTCCACCTGGAAGGCTGCTGTGGTGGAAGGACATTTGATTGCCGAGATGTGGT
GTTCGTTGTTGGGGAAGGAGAAGACCACGACATTCCGATTGGGATCGACAAAGCCCTGGTGAAGATGCAG
AGAGAAGAACAGTGTATTCTATATCTTGGACCACGCTATGGTTTTGGAGAAGCCGGGAAGCCTAAGTTTG
GCATTGACCCCAATGCTGAGCTTATGTACGAGGTCACCCTTAAGAGCTTCGAGAAGGCCAAAGAATCTTG
GGAGATGGACACCAAAGAAAAGCTGACGCAGGCTGCCATCGTGAAAGAGAAGGGAACTGTGTACTTCAAG
GGAGGCAAGTACACGCAGGCCGTGATTCAGTACAGGAAGATAGTGTCCTGGCTGGAGATGGAATACGGCC
TGTCAGAGAAGGAGTCCAAAGCCTCAGAGTCGTTCCTCCTCGCAGCCTTCCTGAACCTGGCCATGTGCTA
CCTGAAGCTCCGAGAGTACAACAAAGCCGTGGAGTGCTGCGACAAGGCCCTTGGACTGGACAGTGCCAAT
GAGAAAGGCTTGTACAGAAGGGGCGAGGCCCAGCTGCTCATGAATGACTTTGAGTCGGCCAAGGGCGACT
TCGAGAAGGTGTTGGCAGTCAATCCTCAGAACAGGGCCGCTCGCCTGCAGATCTCCATGTGCCAGAGGAA
GGCGAAGGAGCACAACGAGCGGGACCGCAGGGTGTACGCCAACATGTTCAAGAAGTTCGCAGAGCGGGAC
GCAAAGGAGGAAGCCAGCAAAGCTGGGAGCAAGAAGGCTGTAGAAGGAGCCGCTGGCAAACAACACGAGA
GTCAGGCCATGGAAGAAGGAAAGGCCAAAGGCCATGTATGA

Translation (456 aa):
MTTDEGTSNNGENPAATMTEQGEDITTKKDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSS
HDRKKPFAFSLGQGQVIKAWDIGVSTMKKGEICHLLCKPEYAYGSAGHLQKIPSNATLFFEIELLDFKGE
DLFEDSGVIRRIKRKGEGYSNPNEGATVKVHLEGCCGGRTFDCRDVVFVVGEGEDHDIPIGIDKALVKMQ
REEQCILYLGPRYGFGEAGKPKFGIDPNAELMYEVTLKSFEKAKESWEMDTKEKLTQAAIVKEKGTVYFK
GGKYTQAVIQYRKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYNKAVECCDKALGLDSAN
EKGLYRRGEAQLLMNDFESAKGDFEKVLAVNPQNRAARLQISMCQRKAKEHNERDRRVYANMFKKFAERD
AKEEASKAGSKKAVEGAAGKQHESQAMEEGKAKGHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH