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Report for CCDS19875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19875.1 Public Mus musculus 5 Lnx2 23 108 98 CCDS HistoryNCBI Gene:140887Re-query CCDS DB by CCDS ID:19875.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016664.7 ENSMUSP00000016664.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016664.7Link to Ensembl Protein Viewer:ENSMUSP00000016664.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016664Re-query CCDS DB by Protein ID:ENSMUSP00000016664
Original member NCBI NM_080795.4 NP_542985.4 Updated not alive Link to Nucleotide Sequence:NM_080795.4Link to Protein Sequence:NP_542985.4Re-query CCDS DB by Nucleotide ID:NM_080795Re-query CCDS DB by Protein ID:NP_542985
Current member NCBI NM_080795.5 NP_542985.4 Accepted alive Link to Nucleotide Sequence:NM_080795.5Link to Protein Sequence:NP_542985.4Re-query CCDS DB by Nucleotide ID:NM_080795Re-query CCDS DB by Protein ID:NP_542985Link to BLAST:NP_542985.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542985.4 687 Q91XL2 687 100% 0 0

Chromosomal Locations for CCDS 19875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147018921 147019056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147020007 147020165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147024352 147024583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147027207 147027384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147028053 147028190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147029087 147029455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147032875 147033074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147033279 147033520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147042031 147042440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGGGAACAACCAGTGACGAGATGGTGCCCGTGGAGCAGGCCTCCTCGACCTCCTCCCTAGATCCCCTGT
GCTTCGAGTGCGGCCAGCAGCACTGGGCGAGAGAAAACCACCTGTATAACTACCAGGGGGAGGTGGACGA
CGACCTCGTGTGCCACATTTGCCTCCAGCCCCTGCTCCAGCCGCTCGACACGCCCTGCGGACACACGTTC
TGCCACAAGTGCCTCAGAAACTTCCTGCAGGAGAAGGATTTCTGCCCGCTGGACCGCAAGCGGCTTCATT
TCAAGCTGTGTAAGAAGTCTAGCATCCTGGTCCACAAGCTGCTGGACAAACTGCTGGTCCTGTGTCCGTT
CTCTCCCGTGTGCCAAGATGTGATGCAGCGCTGTGACCTAGAGGCACATCTTAAAAACAGGTGTCCTGGA
GCCTCTCACCGGAGAGTCGATCTAGAGAGAAGGAAAACGAGTCAAACTCAAACACAGATTGAGGGTGAAA
CTGGATCTACTGTCATAGATCCTCCAGGCACCTTGCCCCCAGAAACGGACTGCTCGGGCACCGTGCCTGG
CGAGAGGAACTTGACACCAGCATCTCTTCCTGTGTGGACCGAGGAGCCTGGCCTGGACAACCCCGCCTTC
GAGGAGAGCGCTGCAGCTGACTCTGTACAGCAGCCGCTTAGTTTACCAGAAGGAGAGATCACCACCATTG
AGATCCACCGCTCTAACCCGTACATCCAGTTAGGAATCAGCATCGTGGGCGGCAACGAGACACCACTGAT
CAACATCGTCATTCAGGAAGTCTACCGGGACGGGGTCATCGCCAGAGATGGAAGGCTCCTTGCCGGAGAC
CAGATTCTCCAGGTCAACAACTATGACATCAGCAACGTGTCCCACAACCACGCCCGGGCCGTGCTTTCCC
AGCCCTGCAGCACGCTGCAGCTGACAGTGCTGCGGGAGAGGCGCTTTGGCAGCCGTGCCAACAGCCACGC
GGACGGCAGCGCGCCACGGGACGAGGTCTTCCAGGTGCTGCTCCACAAGCGAGACTCGACAGAGCAGCTC
GGCATTAAACTAGTCCGAAGGACAGATGAGCCGGGCGTTTTCATTCTTGACCTCCTGGAAGGGGGGCTGG
CAGCACAGGACGGCAGGCTCAACAGCAATGACCGGGTGCTGGCCATCAACGGGCATGACCTGAAGCATGG
GACCCCAGAGCTCGCTGCCCAGATTATTCAGGCCAGTGGAGAGAGGGTGAACTTAACAATTGCCAGACCA
GGGAAGCCCCAGCCCAGCAATGGCAGCCGTGAGGCCGGAGCACACAGCAGCAGCAACCACGCTCAGCCAC
CCTCGCACAGCCGACCGGGCTCACACAAGGACCTCACCCGGTGCGTCACGTGCCAGGAGAAGCACATCAC
TGTAAAGAAGGAGCCGCATGAATCCCTCGGGATGACGGTTGCTGGGGGCAGAGGGAGCAAGAGTGGTGAG
CTGCCCATCTTTGTGACCAGCGTGCCACCCCACGGCTGCCTCGCTCGAGACGGCAGGATCAAGAGAGGTG
ACGTGTTGCTGAACATCAACGGCATTGACCTGACCAACCTAAGTCACAGCGAGGCTGTGGCCATGCTGAA
AGCCAGCGCTGCGTCTCCGGCCGTCATCCTCAAGGCCCTGGAAGTGCAGATCGCCGAGGAAGCAGCCCAG
GCCACCGAGGAGCAGCCGAGCGCCTTCAGTGAGAACGAGTACGACGCCAGCTGGTCCCCGTCCTGGGTCA
TGTGGCTCGGGCTGCCAAGTGCCCTTCACAGTTGTCACGACATCGTCTTACGCAGAAGCTACTTGGGAAG
CTGGGGCTTCAGCATCGTGGGTGGGTACGAAGAGAACCACACCAATCAGCCCTTCTTCATTAAGACCATC
GTCTTAGGAACCCCTGCTTACTATGACGGAAGATTAAAGTGTGGAGACATGATCGTAGCAGTAAACGGCC
TGTCGACTGTGGGCATGAGTCACTCTGCTCTGGTGCCCATGTTGAAAGAACAGAGGAACAAGGTCACGCT
GACGGTCATCTGCTGGCCAGGCAGCCTCGTATAG

Translation (687 aa):
MGTTSDEMVPVEQASSTSSLDPLCFECGQQHWARENHLYNYQGEVDDDLVCHICLQPLLQPLDTPCGHTF
CHKCLRNFLQEKDFCPLDRKRLHFKLCKKSSILVHKLLDKLLVLCPFSPVCQDVMQRCDLEAHLKNRCPG
ASHRRVDLERRKTSQTQTQIEGETGSTVIDPPGTLPPETDCSGTVPGERNLTPASLPVWTEEPGLDNPAF
EESAAADSVQQPLSLPEGEITTIEIHRSNPYIQLGISIVGGNETPLINIVIQEVYRDGVIARDGRLLAGD
QILQVNNYDISNVSHNHARAVLSQPCSTLQLTVLRERRFGSRANSHADGSAPRDEVFQVLLHKRDSTEQL
GIKLVRRTDEPGVFILDLLEGGLAAQDGRLNSNDRVLAINGHDLKHGTPELAAQIIQASGERVNLTIARP
GKPQPSNGSREAGAHSSSNHAQPPSHSRPGSHKDLTRCVTCQEKHITVKKEPHESLGMTVAGGRGSKSGE
LPIFVTSVPPHGCLARDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVILKALEVQIAEEAAQ
ATEEQPSAFSENEYDASWSPSWVMWLGLPSALHSCHDIVLRRSYLGSWGFSIVGGYEENHTNQPFFIKTI
VLGTPAYYDGRLKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTVICWPGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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