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Report for CCDS9486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9486.1 Public Homo sapiens 13 RNF113B 24 110 108 CCDS HistoryNCBI Gene:140432Re-query CCDS DB by CCDS ID:9486.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267291.7 ENSP00000267291.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267291.7Link to Ensembl Protein Viewer:ENSP00000267291.6Re-query CCDS DB by Nucleotide ID:ENST00000267291Re-query CCDS DB by Protein ID:ENSP00000267291
Original member Current member NCBI NM_178861.5 NP_849192.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178861.5Link to Protein Sequence:NP_849192.1Re-query CCDS DB by Nucleotide ID:NM_178861Re-query CCDS DB by Protein ID:NP_849192Link to BLAST:NP_849192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849192.1 322 Q8IZP6 322 100% 0 0

Chromosomal Locations for CCDS 9486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98176163 98176176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98176282 98177236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGCAGCGCCACCTTCTCCAGGAAGGACGGCCGACCAAGCAGACCAGGTATGCACCTTCCTCTTCAAAA
AGCCTGGACGGAAAGGGGCTGCAGGCCTCAGAAAGCGCCCGGCCTGCGACCCCGAGCACGGAGAGAGCAG
CAGCAGCGGGGACGAGGGCGACACAGTGGCTCAGCCCCCGCGGGTGGCACCGAGGCCCCGGGGCCTCCAC
AGCTGGCAGAAGGCGGCTCACGGCGACAGGAGGGGCGAGGAGGCGGCGCCTGAGAGCCTCGACGTGGTGT
ACAGGTCCACCCGCTCGGCGAAGCCTGTGGGGCCAGAGGACATGGGGGCCACCGCTGACTTCGAGCAGGA
CACCGAGAAGGAGCACCATACGCCGACCATCCTCAAGTGCAGCCAGCGGGTCCAGGAGGCACTGCGGGGT
CGGGAGCACGACCACATCTACCGGGGAATCCACAGCTACCTGAGGTACCTGAAGCCCAAGGACACGTCCA
TGGGCAACTCCTCCTCGGGGATGGCGAGGAAGGGCCCCATACGTGCGCCAGGGCATCTGCGCGCCACTGT
GCGCTGGGATTACCAGCCTGACATCTGCAAGGACTACAAGGAGACTGGCTTCTGTGGCTTCGGGGACAGC
TGCAAATTCCTCCACGACCGTTCCGATTACAAGCTCGGGTGGGAGATTGAACGGGAGCTTGAAGAGGGTC
GCTACTGTATCTGCGAGGACGAAAACCATGAAGTGGGAAGCGAGGAAGAGGAAATACCATTCAGGTGTTT
CATATGTCGCCAGGCCTTCCAAAACCCAGTCGTCACCAAGTGCAGGCATTATTTCTGCGAGAGCTGCGCG
CTGGAGCACTTCCGGGCCACCCCGCGCTGCTACATCTGTGACCAGCCAACCGGCGGCATCTTTAACCCCG
CCAAAGAACTGATGGCGAAACTGCAAAAGCTTCAGGCTGCAGAAGGAAAAAAGAGATAA

Translation (322 aa):
MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGLH
SWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEKEHHTPTILKCSQRVQEALRG
REHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDS
CKFLHDRSDYKLGWEIERELEEGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCA
LEHFRATPRCYICDQPTGGIFNPAKELMAKLQKLQAAEGKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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