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Report for CCDS35215.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35215.2 Public Homo sapiens X PTCHD1 24 110 108 CCDS HistoryNCBI Gene:139411Re-query CCDS DB by CCDS ID:35215.2See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35215.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379361.5 ENSP00000368666.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379361.5Link to Ensembl Protein Viewer:ENSP00000368666.4Re-query CCDS DB by Nucleotide ID:ENST00000379361Re-query CCDS DB by Protein ID:ENSP00000368666
Original member Current member NCBI NM_173495.3 NP_775766.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173495.3Link to Protein Sequence:NP_775766.2Re-query CCDS DB by Nucleotide ID:NM_173495Re-query CCDS DB by Protein ID:NP_775766Link to BLAST:NP_775766.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775766.2 888 Q96NR3-1 888 100% 0 0

Chromosomal Locations for CCDS 35215.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 23334876 23335226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23379591 23380251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 23392531 23394185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGCTGCGGCAGGTTCTGCACAGGGGCTTGAGGACGTGTTTCTCCCGGCTCGGCCACTTCATTGCCAGTC
ACCCTGTCTTCTTCGCCTCGGCGCCGGTGCTCATCTCCATCCTGCTCGGCGCCAGCTTCAGCCGCTACCA
GGTCGAGGAGAGCGTGGAGCACCTGCTGGCGCCCCAGCACAGCCTGGCCAAGATCGAGCGCAACCTCGTT
AACAGCCTCTTCCCGGTCAACCGCTCCAAGCACCGTCTCTACTCGGACCTGCAGACCCCCGGGCGCTACG
GCCGGGTCATCGTCACCTCCTTCCAGAAAGCCAACATGCTGGACCAGCATCACACCGACCTGATCTTAAA
GTTGCATGCTGCTGTCACCAAGATCCAGGTTCCAAGGCCTGGTTTTAATTACACGTTTGCCCATATATGT
ATCCTGAATAATGATAAGACTTGCATCGTGGATGACATAGTGCACGTCCTGGAAGAGCTAAAGAATGCTC
GGGCCACCAATCGGACCAATTTTGCTATCACATACCCAATCACTCACTTAAAGGACGGGAGGGCTGTGTA
CAATGGGCACCAGCTTGGGGGCGTCACTGTGCACAGCAAAGACCGGGTGAAATCTGCAGAGGCCATCCAG
CTCACCTACTACCTGCAGTCAATCAACAGTCTCAATGACATGGTGGCTGAGAGGTGGGAGTCCAGCTTCT
GCGACACTGTCAGACTGTTTCAGAAATCCAACAGCAAAGTCAAAATGTACCCTTACACGTCCTCCTCACT
GAGGGAAGATTTCCAGAAGACCAGCCGCGTATCAGAACGTTACCTGGTCACCAGCCTGATTCTGGTGGTT
ACCATGGCCATCCTGTGTTGCTCTATGCAGGACTGCGTCCGCAGCAAACCCTGGCTAGGCCTGCTCGGAT
TGGTGACCATAAGCCTGGCCACTCTCACTGCAGCCGGGATCATCAATCTTACTGGTGGGAAATATAATTC
CACCTTCCTGGGAGTCCCTTTCGTCATGCTAGGTCATGGATTATATGGGACTTTTGAAATGTTATCCTCC
TGGAGGAAAACTAGAGAAGACCAACATGTTAAAGAGAGAACTGCAGCAGTCTATGCAGACTCCATGCTCT
CCTTTTCTCTCACCACTGCCATGTACCTGGTCACCTTTGGCATAGGGGCCAGCCCTTTCACGAACATTGA
GGCAGCCAGGATTTTCTGCTGCAATTCCTGTATTGCAATCTTCTTCAACTACCTCTATGTACTCTCGTTT
TATGGTTCCAGCCTAGTGTTCACTGGCTACATAGAAAACAATTACCAGCATAGTATCTTCTGTAGAAAAG
TCCCAAAGCCTGAGGCATTGCAGGAGAAGCCGGCATGGTACAGGTTTCTCCTGACGGCCAGATTCAGTGA
GGACACAGCTGAAGGCGAGGAAGCGAACACTTACGAGAGTCACCTATTGGTATGTTTCCTCAAACGCTAT
TACTGTGACTGGATAACCAACACCTATGTCAAGCCTTTTGTAGTTCTCTTTTACCTTATTTATATTTCCT
TTGCCTTAATGGGCTATCTGCAGGTCAGTGAAGGGTCAGACCTTAGTAACATTGTAGCAACCGCGACACA
AACCATTGAGTACACTACTGCCCAGCAAAAGTACTTCAGCAACTACAGTCCTGTGATTGGGTTTTACATA
TATGAGTCTATAGAATACTGGAACACTAGTGTCCAAGAAGATGTTCTAGAATACACCAAGGGGTTTGTGC
GGATATCCTGGTTTGAGAGCTATTTAAATTACCTTCGGAAACTCAATGTATCCACTGGCTTGCCTAAGAA
AAATTTCACAGACATGTTGAGGAATTCCTTTCTGAAAGCCCCTCAATTTTCACATTTTCAAGAGGACATC
ATCTTCTCTAAAAAATACAATGATGAGGTCGATGTAGTGGCCTCCAGAATGTTTTTGGTGGCCAAGACCA
TGGAAACAAACAGAGAAGAACTCTATGATCTCTTGGAAACCCTGAGGAGACTTTCTGTCACCTCCAAGGT
GAAGTTCATCGTCTTCAATCCGTCCTTTGTATACATGGATCGATATGCCTCCTCTCTGGGAGCCCCCCTG
CACAACTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTCTCGGCATTCCTGGTGGCAGATTCACTGATTA
ACGTCTGGATCACTCTCACAGTTGTGTCCGTGGAGTTTGGAGTGATAGGTTTCATGACATTATGGAAAGT
AGAACTGGACTGCATTTCTGTGCTATGCTTAATTTATGGAATTAATTACACAATTGACAATTGTGCTCCA
ATGTTATCCACATTTGTTCTGGGCAAGGATTTCACAAGAACTAAATGGGTAAAAAATGCCCTGGAAGTGC
ATGGGGTAGCTATTTTACAGAGTTACCTCTGCTATATTGTTGGTCTGATTCCTCTTGCAGCTGTGCCTTC
AAATCTGACCTGTACACTGTTCAGGTGCTTGTTTTTAATAGCATTTGTCACCTTCTTTCACTGCTTTGCC
ATTTTACCTGTGATACTGACTTTCCTGCCACCCTCTAAGAAAAAAAGGAAAGAGAAGAAAAATCCTGAGA
ACCGGGAGGAAATTGAGTGTGTAGAAATGGTAGATATCGATAGTACCCGTGTGGTTGACCAAATTACAAC
AGTGTGA

Translation (888 aa):
MLRQVLHRGLRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLV
NSLFPVNRSKHRLYSDLQTPGRYGRVIVTSFQKANMLDQHHTDLILKLHAAVTKIQVPRPGFNYTFAHIC
ILNNDKTCIVDDIVHVLEELKNARATNRTNFAITYPITHLKDGRAVYNGHQLGGVTVHSKDRVKSAEAIQ
LTYYLQSINSLNDMVAERWESSFCDTVRLFQKSNSKVKMYPYTSSSLREDFQKTSRVSERYLVTSLILVV
TMAILCCSMQDCVRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGVPFVMLGHGLYGTFEMLSS
WRKTREDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSF
YGSSLVFTGYIENNYQHSIFCRKVPKPEALQEKPAWYRFLLTARFSEDTAEGEEANTYESHLLVCFLKRY
YCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIEYTTAQQKYFSNYSPVIGFYI
YESIEYWNTSVQEDVLEYTKGFVRISWFESYLNYLRKLNVSTGLPKKNFTDMLRNSFLKAPQFSHFQEDI
IFSKKYNDEVDVVASRMFLVAKTMETNREELYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYASSLGAPL
HNSCISALFLLFFSAFLVADSLINVWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAP
MLSTFVLGKDFTRTKWVKNALEVHGVAILQSYLCYIVGLIPLAAVPSNLTCTLFRCLFLIAFVTFFHCFA
ILPVILTFLPPSKKKRKEKKNPENREEIECVEMVDIDSTRVVDQITTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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