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Report for CCDS15235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15235.1 Public Mus musculus 1 En1 23 108 98 CCDS HistoryNCBI Gene:13798Re-query CCDS DB by CCDS ID:15235.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079721.8 ENSMUSP00000078659.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079721.8Link to Ensembl Protein Viewer:ENSMUSP00000078659.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079721Re-query CCDS DB by Protein ID:ENSMUSP00000078659
Original member NCBI NM_010133.2 NP_034263.2 Updated not alive Link to Nucleotide Sequence:NM_010133.2Link to Protein Sequence:NP_034263.2Re-query CCDS DB by Nucleotide ID:NM_010133Re-query CCDS DB by Protein ID:NP_034263
Current member NCBI NM_010133.3 NP_034263.2 Accepted alive Link to Nucleotide Sequence:NM_010133.3Link to Protein Sequence:NP_034263.2Re-query CCDS DB by Nucleotide ID:NM_010133Re-query CCDS DB by Protein ID:NP_034263Link to BLAST:NP_034263.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034263.2 401 P09065 401 100% 0 0

Chromosomal Locations for CCDS 15235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 120603033 120603921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 120606873 120607189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGAAGAACAGCAGCCGGAGCCTAAAAGTCAGCGCGACTCGGGCCTCGGCGCGGTGGCAGCGGCGGCCC
CGAGCGGCCTCAGTCTGAGTCTGAGCCCAGGAGCCAGCGGCAGCAGCGGCAGCGATGGAGACAGCGTGCC
GGTGTCCCCGCAGCCAGCGCCCCCGTCGCCTCCTGCGGCACCCTGTCTGCCGCCCCTGGCCCATCACCCG
CACCTCCCCCCGCATCCCCCGCCCCCGCCGCCGCCGCCGCCGCCGCCACCGCAGCATCTCGCGGCGCCTG
CTCACCAGCCGCAGCCCGCGGCCCAGCTGCACCGCACCACCAACTTTTTCATCGATAACATCCTAAGGCC
CGATTTCGGTTGCAAAAAGGAACAGCCCCTGCCTCAGCTCCTGGTGGCTTCGGCTGCAGCCGGAGGAGGC
GCAGCAGCAGGAGGAGGAAGCCGCGTGGAGCGTGACCGAGGCCAGACTGGTGCAGGTAGAGACCCCGTTC
ACTCTCTGGGCACACGAGCTTCGGGGGCTGCCTCGCTCTTGTGTGCTCCAGATGCGAACTGTGGCCCACC
CGACGGCTCCCAGCCCGCCACCGCTGTCAGCGCCGGCGCATCCAAAGCCGGGAACCCGGCTGCTGCGGCG
GCCGCGGCCGCAGCAGCGGCTGCAGCGGCAGTGGCGGCAGCGGCGGCAGCAGCCTCGAAGCCCTCGGACA
GTGGCGGTGGTAGTGGAGGCAACGCGGGGAGTCCCGGGGCGCAGGGCGCCAAGTTCCCGGAACACAACCC
TGCGATCCTACTCATGGGTTCGGCTAACGGTGGGCCGGTGGTCAAGACTGACTCACAGCAACCCCTAGTG
TGGCCCGCCTGGGTCTACTGCACACGCTATTCGGACCGTCCGTCCTCTGGTCCACGCACCAGGAAGCTAA
AGAAGAAAAAGAACGAGAAGGAAGACAAGCGGCCGCGGACGGCGTTCACGGCCGAGCAGCTGCAGAGACT
CAAGGCGGAGTTCCAGGCAAACCGCTATATCACGGAGCAGCGGCGACAGACCCTCGCCCAGGAGCTCAGC
CTGAATGAGTCCCAGATCAAGATCTGGTTCCAAAACAAGCGTGCCAAGATCAAGAAAGCCACCGGCATCA
AGAACGGCCTGGCGCTGCACCTCATGGCCCAGGGACTGTACAACCACTCTACCACCACGGTTCAGGACAA
AGACGAGAGCGAGTAG

Translation (401 aa):
MEEQQPEPKSQRDSGLGAVAAAAPSGLSLSLSPGASGSSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHP
HLPPHPPPPPPPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPLPQLLVASAAAGGG
AAAGGGSRVERDRGQTGAGRDPVHSLGTRASGAASLLCAPDANCGPPDGSQPATAVSAGASKAGNPAAAA
AAAAAAAAAAVAAAAAAASKPSDSGGGSGGNAGSPGAQGAKFPEHNPAILLMGSANGGPVVKTDSQQPLV
WPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELS
LNESQIKIWFQNKRAKIKKATGIKNGLALHLMAQGLYNHSTTTVQDKDESE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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