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Report for CCDS20526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20526.1 Public Mus musculus 6 Atn1 23 108 98 CCDS HistoryNCBI Gene:13498Re-query CCDS DB by CCDS ID:20526.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088357.11 ENSMUSP00000085695.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088357.11Link to Ensembl Protein Viewer:ENSMUSP00000085695.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088357Re-query CCDS DB by Protein ID:ENSMUSP00000085695
Original member Current member EBI ENSMUST00000129411.6 ENSMUSP00000115407.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129411.6Link to Ensembl Protein Viewer:ENSMUSP00000115407.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129411Re-query CCDS DB by Protein ID:ENSMUSP00000115407
Original member Current member NCBI NM_007881.4 NP_031907.2 Accepted alive Link to Nucleotide Sequence:NM_007881.4Link to Protein Sequence:NP_031907.2Re-query CCDS DB by Nucleotide ID:NM_007881Re-query CCDS DB by Protein ID:NP_031907Link to BLAST:NP_031907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031907.2 1175 O35126 1175 100% 0 0

Chromosomal Locations for CCDS 20526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124743072 124743105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124743230 124743410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124743748 124743891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124744720 124745416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124745639 124745861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124746020 124747989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124749236 124749349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124749462 124749599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124749747 124749773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGAAGACACGACAGAATAAAGACTCGATGTCAATGAGGAGTGGACGGAAGAAAGAGGCCCCCGGGCCCC
GGGAAGAGCTGAGATCAAGGGGCCGGGCCTCCCCTGGAGGGGTCAGCACATCCAGCAGTGATGGCAAAGC
TGAGAAGTCCAGGCAGACAGCCAAGAAGGCCCGGATAGAGGAGCCCTCTGCCCCAAAGGCCAGCAAGCAG
GGCCGGAGCGAGGAGATCTCAGAGAGTGAGAGCGAGGAGACCAGTGCGCCCAAAAAGACCAAAACCGAGC
AGGAGCTCCCTCGCCCGCAGTCTCCCTCGGATCTGGACAGCTTGGATGGGCGCAGCATTAACGATGACGG
CAGCAGCGACCCTAGAGATATAGACCAGGACAACCGAAGCACATCCCCCAGCATCTACAGCCCGGGCAGC
GTGGAAAATGACTCGGACTCATCCTCTGGCCTGTCCCAGGGCCCCGCCCGCCCCTACCACCCACCTCCAC
TCTTCCCTCCTTCCCCTCCACCACCAGACAGCACTCCCCGACAGCCAGAGTCTGGCTTTGAACCTCATCC
TTCTGTGCCGCCTACTGGATATCATGCTCCGATGGAGCCCCCCACATCGAGATTATTCCAGGGCCCACCA
CCTGGAGCTCCTCCCACACACCCACAGCTCTACCCTGGGAATGCTAGTGGAGGTGTTTTATCTGGACCCC
CCATGGGTCCCAAAGGGGGAGCCGCTGCCTCCTCAGTGGGTGCCCCTAGCGGAGGCAAGCAACACCCCCC
ACCCACTACCCCAATTCCAATATCAAGTTCTGGGGCCAGTGGTGCTCCTCCAGCAAAGCCACCCAGTGCT
CCAGTGGGTGGTGGGAGCTTACCTTCTGCACCACCACCAGCTTCTTTCCCCCATGTGACACCAAACCTGC
CTCCTCCACCTGCCCTGAGACCCCTCAACAATGCCTCAGCCTCTCCTCCTGGCATGGGGGCTCAGCCAAT
CCCTGGGCATCTGCCCTCTCCCCATGCCATGGGGCAGGGCATGAGTGGACTTCCTCCTGGCCCAGAGAAG
GGTCCAACCCTGGCCCCTTCTCCCCACCCTTTGCCCCCAGCTTCTTCCTCTGCCCCTGGGCCTCCAATGC
GATATCCATATTCATCCTCCAGTAGCTCTGCCGCAGCCTCTTCTAGTTCCTCCTCCTCCTCTGCCTCCCA
GTACCCTGCTTCCCAGGCCCTGCCCAGTTATCCTCATTCCTTCCCCCCACCAACTAGTATGTCTGTCTCT
AATCAGCCACCCAAGTACACCCAGCCTTCTCTCCCATCCCAAGCTGTGTGGAGCCAGGGTCCACCTCCTC
CTCCTCCCTATGGCCGCCTCTTGGCCAACAACAACACCCATCCAGGCCCTTTCCCTCCTACTGGGGGTCA
ATCTACAGCCCACCCAGCAGCCCCTACACATCACCATCACCAGCAGCAGCCACAGCAACAACATCATCAT
GGAAACTCTGGGCCCCCTCCACCCGGAGCGTATCCTCACCCTCTAGAGAGCAGTAACTCCCATCATGCAC
ACCCTTACAACATGTCACCCTCCCTGGGGTCTTTAAGGCCCTACCCCCCAGGGCCAGCACACCTGCCTCC
ACCTCATGGCCAGGTGTCCTATAACCAAGCAGGTCCCAATGGTCCCCCAGTTTCTTCTTCCAACTCTTCC
GGGTCTTCCTCTCAAGCCTCCTATTCATGTTCACACCCCTCTTCATCCCAGGGCCCCCAAGGAGCATCCT
ACCCCTTCCCACCAGTCCCTCCAGTCACCACCTCCTCAGCTACCCTTTCCACTGTCATCGCCACCGTGGC
TTCCTCGCCAGCAGGCTACAAAACAGCTTCGCCACCTGGGCCCCCTCAGTACAGCAAGAGAGCCCCATCC
CCAGGGTCCTACAAGACAGCCACCCCGCCTGGATACAAACCGGGGTCACCACCCTCCTTCAGAACAGGGA
CCCCACCCGGCTATCGAGGCACCTCTCCGCCAGCAGGCCCAGGGACCTTCAAACCAGGTTCACCGACCGT
GGGGCCGGGGCCCCTGCCACCCGCGGGGCCTTCAAGTTTGTCATCTCTGCCTCCGCCACCTGCGGCCCCG
ACTACAGGGCCGCCCCTGACCGCCACGCAGATCAAACAGGAGCCGGCGGAAGAGTATGAACCTCCCGAGA
GTCCGGTGCCTCCGGCCCGCAGCCCCTCGCCCCCTCCCAAGGTGGTGGACGTGCCCAGCCATGCCAGCCA
GTCAGCCAGGTTCAATAAGCACTTGGACCGCGGCTTCAACTCGTGCGCGCGCAGCGACCTGTACTTCGTG
CCGCTGGAGGGCTCCAAGCTGGCCAAGAAGCGCGCGGACCTGGTGGAGAAAGTGCGGCGCGAGGCCGAGC
AGCGCGCGCGCGAGGAGAAAGAGCGCGAGCGCGAGCGGGAACGCGAAAAGGAGCGCGAGCGCGAGAAAGA
GCGCGAGCTGGAGCGCAGTGTGAAACTGGCCCAGGAGGGCCGTGCTCCAGTGGAGTGCCCATCTCTGGGT
CCAGTGCCCCATCGGCCTCCCTTTGAGCCTGGCAGCGCTGTGGCTACAGTGCCCCCTTACCTGGGTCCTG
ATACTCCGGCCTTGCGCACTCTCAGTGAATACGCCCGACCTCATGTCATGTCTCCTGGCAATCGCAACCA
CCCATTCTATGTGCCCTTGGGGGCAGTGGACCCGGGGCTTCTGGGTTACAATGTCCCAGCCCTGTACAGC
AGCGACCCAGCTGCCCGAGAACGGGAGCGGGAAGCCCGTGAACGTGACCTCCGTGACCGGCTCAAGCCTG
GCTTTGAGGTGAAACCTAGTGAGCTGGAACCCCTACATGGGGTTCCCGGGCCAGGCCTGGATCCCTTCCC
CCGACACGGGGGCCTGGCTCTACAGCCCGGGCCACCTGGCCTGCATCCTTTCCCTTTTCATCCGAGCCTG
GGGCCCCTGGAACGAGAACGGCTAGCGCTGGCAGCTGGGCCAGCCTTGCGTCCTGACATGTCTTATGCTG
AGCGGTTGGCAGCTGAAAGGCAGCATGCAGAAAGGGTGGCAGCCCTGGGCAATGATCCACTAGCCCGGCT
GCAGATGCTCAACGTGACTCCCCATCACCACCAGCACTCCCACATCCACTCTCACCTTCACCTGCACCAG
CAGGATGCTATCCACGCAGCCTCTGCCTCGGTGCACCCTCTCATTGACCCCCTGGCCTCAGGGTCTCACC
TTACCCGGATCCCCTACCCAGCTGGGACCCTCCCCAACCCCCTTCTTCCTCACCCTCTGCACGAGAACGA
AGTTCTTCGTCACCAGCTTTTTGCTGCCCCTTACCGGGACCTGCCGGCCTCCCTTTCTGCTCCAATGTCA
GCGGCTCATCAGCTGCAGGCCATGCACGCGCAGTCAGCTGAGCTGCAGCGCTTGGCGCTGGAACAGCAGC
AGTGGCTACATGCTCATCACCCATTGCACAGCGTGCCACTACCTGCCCAGGAAGACTACTACAGTCACCT
GAAGAAGGAGAGTGACAAGCCGCTGTAG

Translation (1175 aa):
MKTRQNKDSMSMRSGRKKEAPGPREELRSRGRASPGGVSTSSSDGKAEKSRQTAKKARIEEPSAPKASKQ
GRSEEISESESEETSAPKKTKTEQELPRPQSPSDLDSLDGRSINDDGSSDPRDIDQDNRSTSPSIYSPGS
VENDSDSSSGLSQGPARPYHPPPLFPPSPPPPDSTPRQPESGFEPHPSVPPTGYHAPMEPPTSRLFQGPP
PGAPPTHPQLYPGNASGGVLSGPPMGPKGGAAASSVGAPSGGKQHPPPTTPIPISSSGASGAPPAKPPSA
PVGGGSLPSAPPPASFPHVTPNLPPPPALRPLNNASASPPGMGAQPIPGHLPSPHAMGQGMSGLPPGPEK
GPTLAPSPHPLPPASSSAPGPPMRYPYSSSSSSAAASSSSSSSSASQYPASQALPSYPHSFPPPTSMSVS
NQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANNNTHPGPFPPTGGQSTAHPAAPTHHHHQQQPQQQHHH
GNSGPPPPGAYPHPLESSNSHHAHPYNMSPSLGSLRPYPPGPAHLPPPHGQVSYNQAGPNGPPVSSSNSS
GSSSQASYSCSHPSSSQGPQGASYPFPPVPPVTTSSATLSTVIATVASSPAGYKTASPPGPPQYSKRAPS
PGSYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSSLSSLPPPPAAP
TTGPPLTATQIKQEPAEEYEPPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFV
PLEGSKLAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPSLG
PVPHRPPFEPGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGNRNHPFYVPLGAVDPGLLGYNVPALYS
SDPAAREREREARERDLRDRLKPGFEVKPSELEPLHGVPGPGLDPFPRHGGLALQPGPPGLHPFPFHPSL
GPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLHLHQ
QDAIHAASASVHPLIDPLASGSHLTRIPYPAGTLPNPLLPHPLHENEVLRHQLFAAPYRDLPASLSAPMS
AAHQLQAMHAQSAELQRLALEQQQWLHAHHPLHSVPLPAQEDYYSHLKKESDKPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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