NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25273.1 Public Mus musculus 11 Dlx4 23 108 98 CCDS HistoryNCBI Gene:13394Re-query CCDS DB by CCDS ID:25273.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021241.7 ENSMUSP00000021241.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021241.7Link to Ensembl Protein Viewer:ENSMUSP00000021241.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021241Re-query CCDS DB by Protein ID:ENSMUSP00000021241
Original member Current member NCBI NM_007867.4 NP_031893.3 Accepted alive Link to Nucleotide Sequence:NM_007867.4Link to Protein Sequence:NP_031893.3Re-query CCDS DB by Nucleotide ID:NM_007867Re-query CCDS DB by Protein ID:NP_031893Link to BLAST:NP_031893.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031893.3 240 P70436 240 100% 0 0

Chromosomal Locations for CCDS 25273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 95141224 95141469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95141789 95141979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 95145196 95145481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGACCTCTTTACCCTGTCCCCTTCCTGACCGTGGTGCCTCCAACGTTGTCTTCCCGGACCTCGCCCCCG
CCCTGTCGGTAGTGGCTGCTTACCCGCTCGGACTATCCCCGGGAACCGCAGCTTCTCCCGATTTGTCCTA
CTCCCAGTCCTACGGCCACCCCCGGTCCTATTCCCACCCTGGGCCGGCAACCCCAGGAGACTCCTACCTG
CCCCGCCAGCAACAATTGGTGGCGCCATCTCAGCCCTTTCACAGGCCGGCTGAACACCCGCAGGAGCTCG
AAGCAGAATCAGAGAAGCTGGCACTGTCTCTGGTGCCCTCCCAGCAGCAGTCCCTGACCAGGAAGCTGCG
CAAGCCCAGAACCATCTACTCTAGCCTGCAGCTCCAACACCTGAACCAGCGTTTCCAGCACACCCAATAC
CTGGCCCTGCCCGAGAGAGCTCAGCTGGCAGCACAACTCGGACTCACCCAAACCCAGGTAAAGATCTGGT
TTCAGAACAAACGCTCCAAATATAAGAAGCTCCTGAAACAGAGCTCTGGGGAGCCGGAAGAGGACTTCTC
TGGGAGACCCCCCTCCCTGTCTCCCCACTCTCCAGCCCTACCATTCATCTGGGGTCTACCCAAGGCAGAC
ACCCTGCCTTCCAGTGGCTATGACAACAGCCACTTTGGTGCCTGGTATCAGCATCGCTCCCCAGATGTGC
TGGCACTGCCTCAGATGATGTGA

Translation (240 aa):
MTSLPCPLPDRGASNVVFPDLAPALSVVAAYPLGLSPGTAASPDLSYSQSYGHPRSYSHPGPATPGDSYL
PRQQQLVAPSQPFHRPAEHPQELEAESEKLALSLVPSQQQSLTRKLRKPRTIYSSLQLQHLNQRFQHTQY
LALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQSSGEPEEDFSGRPPSLSPHSPALPFIWGLPKAD
TLPSSGYDNSHFGAWYQHRSPDVLALPQMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH