NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47059.1 Public Homo sapiens 4 PDCL2 24 110 108 CCDS HistoryNCBI Gene:132954Re-query CCDS DB by CCDS ID:47059.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295645.9 ENSP00000295645.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295645.9Link to Ensembl Protein Viewer:ENSP00000295645.4Re-query CCDS DB by Nucleotide ID:ENST00000295645Re-query CCDS DB by Protein ID:ENSP00000295645
Original member Current member NCBI NM_152401.3 NP_689614.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152401.3Link to Protein Sequence:NP_689614.2Re-query CCDS DB by Nucleotide ID:NM_152401Re-query CCDS DB by Protein ID:NP_689614Link to BLAST:NP_689614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689614.2 241 Q8N4E4 241 100% 0 0

Chromosomal Locations for CCDS 47059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 55556557 55556711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55562404 55562612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55569718 55569861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55580821 55580911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55582117 55582237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55592104 55592109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCAGGATCCCAATGAAGATACAGAATGGAATGACATTTTAAGAGATTTCGGCATTCTTCCTCCTAAAG
AAGAGTCAAAAGATGAAATTGAAGAAATGGTTTTACGTTTACAGAAAGAAGCAATGGTGAAACCATTTGA
AAAGATGACTCTTGCACAGCTAAAGGAAGCTGAAGATGAATTTGATGAAGAAGATATGCAGGCTGTTGAA
ACATATAGAAAGAAGCGGTTACAGGAATGGAAAGCTCTTAAGAAAAAACAAAAATTTGGAGAATTAAGAG
AAATTTCTGGAAATCAGTATGTGAATGAAGTCACAAATGCAGAAGAAGATGTGTGGGTTATAATTCATCT
ATACAGATCAAGCATCCCAATGTGTTTGTTGGTTAACCAGCATCTTAGTCTTCTAGCAAGAAAGTTTCCA
GAAACTAAATTTGTTAAAGCCATCGTGAATAGCTGTATTCAACACTACCATGACAATTGTTTACCAACAA
TTTTTGTGTATAAAAATGGTCAGATAGAAGCCAAATTCATTGGAATTATAGAATGTGGAGGGATAAATCT
CAAGCTGGAAGAACTTGAATGGAAGCTAGCAGAAGTTGGAGCAATACAGACTGATTTGGAAGAAAACCCC
AGAAAAGACATGGTAGATATGATGGTATCTTCAATTAGAAACACTTCTATTCATGATGACAGTGATAGCT
CCAACAGTGATAATGATACCAAATAG

Translation (241 aa):
MQDPNEDTEWNDILRDFGILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVE
TYRKKRLQEWKALKKKQKFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP
ETKFVKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQTDLEENP
RKDMVDMMVSSIRNTSIHDDSDSSNSDNDTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH