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Report for CCDS22606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22606.1 Public Mus musculus 8 Ctcf 23 108 98 CCDS HistoryNCBI Gene:13018Re-query CCDS DB by CCDS ID:22606.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005841.15 ENSMUSP00000005841.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005841.15Link to Ensembl Protein Viewer:ENSMUSP00000005841.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000005841Re-query CCDS DB by Protein ID:ENSMUSP00000005841
Original member NCBI NM_181322.3 NP_851839.1 Updated not alive Link to Nucleotide Sequence:NM_181322.3Link to Protein Sequence:NP_851839.1Re-query CCDS DB by Nucleotide ID:NM_181322Re-query CCDS DB by Protein ID:NP_851839
Current member NCBI NM_181322.4 NP_851839.1 Accepted alive Link to Nucleotide Sequence:NM_181322.4Link to Protein Sequence:NP_851839.1Re-query CCDS DB by Nucleotide ID:NM_181322Re-query CCDS DB by Protein ID:NP_851839Link to BLAST:NP_851839.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851839.1 736 Q61164 736 100% 0 0

Chromosomal Locations for CCDS 22606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105663763 105664543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105664856 105665026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105666659 105666792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105670231 105670351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105671291 105671440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105674869 105675029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105675996 105676178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105677215 105677350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105680071 105680259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105681435 105681619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGGAAGGTGAGGCGGTTGAAGCCATTGTGGAGGAGTCTGAAACTTTCATTAAAGGAAAAGAAAGAAAGA
CTTACCAGAGACGCCGGGAAGGGGGCCAGGAAGAAGATGCTTGCCACCTGCCCCAGAACCAGACAGATGG
GGGTGAGGTGGTCCAGGATGTCAACAGCAGTGTACAGATGGTAATGATGGAACAGCTGGATCCTACCCTT
CTCCAGATGAAGACTGAAGTCATGGAGGGTACAGTGGCTCCGGAAGCAGAGGCTGCAGTGGACGATACCC
AGATCATAACCTTGCAGGTTGTAAATATGGAGGAACAGCCCATTAACATAGGAGAGCTTCAGCTTGTCCA
AGTACCTGTTCCTGTGACGGTACCTGTTGCTACTACTTCAGTAGAAGAACTTCAGGGGGCTTATGAGAAT
GAAGTGTCTAAAGAGGGCCTTGCAGAAAGTGAACCGATGATATGTCACACCTTACCTTTGCCTGAAGGAT
TTCAGGTGGTGAAAGTGGGGGCCAATGGAGAAGTGGAGACACTAGAGCAGGGCGAGCTTCCTCCTCAGGA
AGACTCTAGCTGGCAAAAAGACCCAGACTATCAGCCACCAGCCAAAAAAACAAAGAAAACCAAAAAGAGC
AAACTTCGTTACACAGAAGAGGGCAAAGACGTGGATGTGTCTGTGTATGATTTTGAGGAAGAACAGCAGG
AAGGACTGCTGTCTGAGGTTAATGCAGAGAAAGTAGTTGGTAATATGAAGCCTCCGAAGCCAACAAAAAT
TAAAAAAAAAGGTGTAAAGAAAACATTCCAGTGTGAGCTTTGCAGTTACACATGTCCCCGGCGTTCAAAT
TTGGATCGTCACATGAAAAGCCACACTGATGAGAGACCACACAAATGCCATCTGTGTGGCAGAGCATTCA
GAACAGTGACCCTCCTGAGGAATCATCTGAACACACACACAGGTACTCGTCCTCACAAGTGCCCAGACTG
CGATATGGCCTTTGTGACCAGTGGAGAATTGGTGCGGCATCGTCGTTATAAACACACTCATGAGAAACCA
TTTAAGTGTTCCATGTGTGATTATGCCAGTGTAGAAGTCAGCAAATTAAAACGACACATTCGCTCTCATA
CTGGAGAGCGCCCGTTCCAGTGCAGTTTGTGCAGTTATGCCAGCAGGGACACATACAAGCTGAAAAGGCA
TATGAGAACCCATTCAGGGGAAAAACCTTATGAATGTTATATTTGTCACGCTCGGTTTACCCAGAGTGGT
ACCATGAAGATGCACATTTTACAGAAGCACACAGAAAATGTGGCCAAATTTCATTGTCCCCATTGTGACA
CTGTCATAGCCCGAAAAAGTGATTTGGGTGTCCACTTGCGAAAGCAGCATTCCTATATTGAACAGGGCAA
AAAATGTCGCTACTGTGATGCTGTGTTTCATGAGCGATATGCTCTCATCCAGCATCAAAAATCACACAAA
AATGAGAAGCGCTTCAAGTGTGACCAGTGTGATTATGCTTGTAGACAGGAGCGGCACATGATCATGCACA
AGCGCACTCACACGGGGGAGAAGCCTTATGCCTGCAGCCACTGCGACAAGACCTTCCGCCAGAAACAGCT
CCTCGACATGCATTTCAAGCGCTATCATGATCCCAACTTTGTCCCTGCTGCCTTTGTCTGTTCCAAGTGT
GGGAAAACATTCACCCGCCGGAACACAATGGCAAGACATGCAGATAACTGTGCTGGTCCAGATGGCGTAG
AGGGGGAAAATGGAGGGGAGACAAAGAAGAGCAAACGAGGAAGAAAAAGAAAGATGCGATCTAAAAAAGA
AGACTCCTCTGACAGTGAAGAAAATGCTGAGCCGGATCTCGATGACAATGAGGAGGAGGAGGAGCCTGCT
GTAGAAATTGAACCTGAGCCAGAGCCTCAGCCCCAGCCTCCGCCTCCACCTCAGCCTGTGGCCCCGGCCC
CCCCACCTGCCAAGAAGAGAAGGGGGCGACCTCCTGGAAGAACCAACCAGCCCAAACAGAACCAGCCAAC
AGCCATCATTCAGGTCGAAGATCAGAATACAGGTGCAATTGAGAACATTATAGTTGAAGTCAAAAAGGAG
CCAGATGCCGAGCCTGCGGAGGGGGAAGAAGAGGAGGCTCAGGCAGCCACCACAGACGCCCCCAACGGAG
ACCTCACGCCTGAGATGATCCTCAGCATGATGGACCGGTGA

Translation (736 aa):
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTL
LQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEELQGAYEN
EVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDSSWQKDPDYQPPAKKTKKTKKS
KLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSN
LDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKP
FKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHK
NEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC
GKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSEENAEPDLDDNEEEEEPA
VEIEPEPEPQPQPPPPPQPVAPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKE
PDAEPAEGEEEEAQAATTDAPNGDLTPEMILSMMDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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